Wall clock time and date at job start Mon Mar 30 2020 02:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46900 * 110.99995 * 2 1 4 4 C 1.50701 * 109.47133 * 66.04922 * 3 2 1 5 5 H 1.08000 * 119.99827 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00485 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99526 * 359.97438 * 6 4 3 8 8 Si 1.86790 * 120.00319 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47236 * 89.99649 * 8 6 4 10 10 H 1.48503 * 109.47346 * 209.99718 * 8 6 4 11 11 H 1.48498 * 109.47102 * 329.99834 * 8 6 4 12 12 C 1.46901 * 110.99778 * 236.04793 * 2 1 3 13 13 H 1.09002 * 110.42882 * 70.10722 * 12 2 1 14 14 C 1.54889 * 110.48779 * 307.56879 * 12 2 1 15 15 C 1.54886 * 102.74640 * 203.38098 * 14 12 2 16 16 C 1.54263 * 104.19905 * 37.94037 * 15 14 12 17 17 C 1.53876 * 106.59902 * 336.38793 * 16 15 14 18 18 H 1.08996 * 110.03576 * 240.71922 * 17 16 15 19 19 O 1.42907 * 110.03179 * 119.28379 * 17 16 15 20 20 H 1.08997 * 109.46875 * 180.47408 * 1 2 3 21 21 H 1.09002 * 109.46484 * 300.46951 * 1 2 3 22 22 H 1.09002 * 109.47011 * 60.46681 * 1 2 3 23 23 H 1.08994 * 109.46926 * 186.04609 * 3 2 1 24 24 H 1.09003 * 109.47470 * 306.04859 * 3 2 1 25 25 H 0.96998 * 119.99723 * 180.02562 * 7 6 4 26 26 H 1.09005 * 110.74980 * 321.69229 * 14 12 2 27 27 H 1.08999 * 110.75741 * 85.06448 * 14 12 2 28 28 H 1.09004 * 110.48598 * 156.62367 * 15 14 12 29 29 H 1.09002 * 110.48492 * 279.25946 * 15 14 12 30 30 H 1.08996 * 110.03180 * 95.67370 * 16 15 14 31 31 H 1.09003 * 110.02949 * 217.10545 * 16 15 14 32 32 H 0.96695 * 113.99677 * 62.83446 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 1.2985 5 1 1.0741 1.5114 2.0485 6 6 2.0269 3.3495 1.5286 7 7 2.7120 4.0019 0.6150 8 14 1.5819 4.1871 3.1378 9 1 2.6585 3.9510 4.1330 10 1 1.4294 5.6467 2.9105 11 1 0.3041 3.6296 3.6493 12 6 1.9955 -0.7660 -1.1376 13 1 1.8073 -0.2371 -2.0720 14 6 1.3638 -2.1796 -1.1781 15 6 2.4098 -2.9986 -1.9745 16 6 3.7680 -2.4504 -1.4903 17 6 3.5046 -1.0308 -0.9582 18 1 4.0817 -0.3045 -1.5304 19 8 3.8539 -0.9539 0.4254 20 1 -0.3633 -1.0276 0.0085 21 1 -0.3632 0.5211 0.8858 22 1 -0.3633 0.5066 -0.8942 23 1 3.0797 1.3444 -0.1082 24 1 1.5612 1.9274 -0.8309 25 1 2.9866 4.9180 0.7771 26 1 1.2461 -2.5790 -0.1707 27 1 0.4080 -2.1608 -1.7016 28 1 2.3215 -4.0597 -1.7411 29 1 2.2906 -2.8313 -3.0450 30 1 4.1623 -3.0807 -0.6932 31 1 4.4730 -2.4130 -2.3207 32 1 4.7911 -1.1115 0.6037 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037690275.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:59 Heat of formation + Delta-G solvation = -49.578747 kcal Electronic energy + Delta-G solvation = -13420.830457 eV Core-core repulsion = 11188.186592 eV Total energy + Delta-G solvation = -2232.643865 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.76356 -35.29872 -34.07340 -32.23630 -28.05675 -27.36886 -26.54359 -24.08823 -21.20244 -20.22929 -18.99802 -16.76626 -16.31085 -15.21338 -14.63920 -14.51004 -14.05577 -13.50154 -12.90608 -12.68464 -12.04481 -11.85714 -11.69941 -11.15581 -11.01985 -10.95118 -10.74136 -10.47712 -10.39587 -10.22930 -10.01231 -9.56864 -9.28760 -9.03368 -8.30485 -7.00324 -5.91043 -3.89899 3.39175 3.44232 3.48573 4.50878 4.72984 4.85592 4.92955 5.20410 5.35708 5.44857 5.67380 5.75903 5.79909 5.88784 6.07261 6.09820 6.22800 6.27272 6.30271 6.47726 6.54765 6.65075 6.85846 7.46200 7.50165 7.93924 8.22342 8.38412 8.42793 8.74842 9.17443 9.72654 11.20307 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.055233 B = 0.009446 C = 0.008809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.821747 B = 2963.474311 C = 3177.976335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.515 5.515 3 C 0.197 3.803 4 C -0.494 4.494 5 H 0.061 0.939 6 C 0.051 3.949 7 N -0.903 5.903 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.275 1.275 12 C 0.084 3.916 13 H 0.040 0.960 14 C -0.116 4.116 15 C -0.120 4.120 16 C -0.156 4.156 17 C 0.111 3.889 18 H 0.047 0.953 19 O -0.524 6.524 20 H 0.045 0.955 21 H 0.071 0.929 22 H 0.006 0.994 23 H 0.035 0.965 24 H -0.018 1.018 25 H 0.259 0.741 26 H 0.078 0.922 27 H 0.059 0.941 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.613 -11.366 -4.744 12.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.239 5.239 3 C 0.072 3.928 4 C -0.533 4.533 5 H 0.080 0.920 6 C -0.149 4.149 7 N -0.544 5.544 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.215 1.215 11 H -0.200 1.200 12 C -0.025 4.025 13 H 0.058 0.942 14 C -0.154 4.154 15 C -0.158 4.158 16 C -0.194 4.194 17 C 0.051 3.949 18 H 0.065 0.935 19 O -0.325 6.325 20 H 0.064 0.936 21 H 0.090 0.910 22 H 0.025 0.975 23 H 0.054 0.946 24 H -0.001 1.001 25 H 0.068 0.932 26 H 0.097 0.903 27 H 0.078 0.922 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.079 0.921 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 0.200 -11.278 -4.281 12.065 hybrid contribution 0.224 0.900 -0.108 0.934 sum 0.423 -10.378 -4.389 11.276 Atomic orbital electron populations 1.22257 0.89495 0.99127 1.00444 1.62108 1.05793 1.17555 1.38462 1.19690 0.95774 0.81316 0.95989 1.21168 1.33909 0.96559 1.01687 0.92044 1.24977 0.95620 0.97409 0.96864 1.69969 1.39046 1.11333 1.34023 0.86518 0.78794 0.78300 0.83881 1.20738 1.21486 1.19967 1.22458 0.92701 0.94085 0.93270 0.94179 1.22588 0.97166 0.94983 1.00630 1.22244 0.95022 0.99184 0.99400 1.22958 0.97743 0.97936 1.00797 1.22309 0.95712 0.93441 0.83453 0.93498 1.86923 1.28332 1.94282 1.22970 0.93584 0.90992 0.97544 0.94647 1.00061 0.93186 0.90318 0.92221 0.91915 0.92024 0.91035 0.92057 0.79851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.06 60.07 0.54 1.28 16 2 N -0.51 -11.91 3.95 -234.32 -0.93 -12.83 16 3 C 0.20 5.43 4.39 -4.98 -0.02 5.41 16 4 C -0.49 -14.59 8.51 -34.44 -0.29 -14.89 16 5 H 0.06 1.81 7.10 -52.49 -0.37 1.44 16 6 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 7 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 8 Si 0.90 22.47 29.54 -169.99 -5.02 17.45 16 9 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 10 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.08 1.62 2.53 -66.05 -0.17 1.45 16 13 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 14 C -0.12 -1.79 4.89 -24.74 -0.12 -1.91 16 15 C -0.12 -1.53 6.83 -25.08 -0.17 -1.70 16 16 C -0.16 -2.08 6.61 -25.61 -0.17 -2.25 16 17 C 0.11 1.94 3.30 -25.61 -0.08 1.86 16 18 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 19 O -0.52 -10.15 11.69 -35.23 -0.41 -10.56 16 20 H 0.05 0.82 6.59 -51.93 -0.34 0.47 16 21 H 0.07 1.60 6.84 -51.93 -0.36 1.24 16 22 H 0.01 0.13 8.14 -51.93 -0.42 -0.30 16 23 H 0.04 1.04 6.76 -51.93 -0.35 0.69 16 24 H -0.02 -0.54 8.12 -51.93 -0.42 -0.96 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.08 1.30 8.04 -51.93 -0.42 0.89 16 27 H 0.06 0.85 7.91 -51.93 -0.41 0.44 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.91 7.95 -51.93 -0.41 0.49 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.36 5.18 9.11 45.56 0.42 5.60 16 LS Contribution 256.96 15.07 3.87 3.87 Total: -1.00 -32.60 256.96 -6.67 -39.27 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: -4.34 Total: -0.85 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -0.58 Total: -9.33 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: -0.19 Total: -39.85 kcal Atomic # 8 Polarization: -10.15 SS G_CDS: -0.41 Total: -10.56 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.60 -6.67 -39.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037690275.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.307 kcal (2) G-P(sol) polarization free energy of solvation -32.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds