Wall clock time and date at job start Mon Mar 30 2020 02:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46900 * 110.99995 * 2 1 4 4 C 1.50701 * 109.47133 * 66.04922 * 3 2 1 5 5 H 1.08000 * 119.99827 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00485 * 180.02562 * 4 3 2 7 7 N 1.31520 * 119.99526 * 359.97438 * 6 4 3 8 8 Si 1.86790 * 120.00319 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.47236 * 89.99649 * 8 6 4 10 10 H 1.48503 * 109.47346 * 209.99718 * 8 6 4 11 11 H 1.48498 * 109.47102 * 329.99834 * 8 6 4 12 12 C 1.46901 * 110.99778 * 236.04793 * 2 1 3 13 13 H 1.09002 * 110.42882 * 70.10722 * 12 2 1 14 14 C 1.54889 * 110.48779 * 307.56879 * 12 2 1 15 15 C 1.54886 * 102.74640 * 203.38098 * 14 12 2 16 16 C 1.54263 * 104.19905 * 37.94037 * 15 14 12 17 17 C 1.53876 * 106.59902 * 336.38793 * 16 15 14 18 18 H 1.08996 * 110.03576 * 240.71922 * 17 16 15 19 19 O 1.42907 * 110.03179 * 119.28379 * 17 16 15 20 20 H 1.08997 * 109.46875 * 180.47408 * 1 2 3 21 21 H 1.09002 * 109.46484 * 300.46951 * 1 2 3 22 22 H 1.09002 * 109.47011 * 60.46681 * 1 2 3 23 23 H 1.08994 * 109.46926 * 186.04609 * 3 2 1 24 24 H 1.09003 * 109.47470 * 306.04859 * 3 2 1 25 25 H 0.96998 * 119.99723 * 180.02562 * 7 6 4 26 26 H 1.09005 * 110.74980 * 321.69229 * 14 12 2 27 27 H 1.08999 * 110.75741 * 85.06448 * 14 12 2 28 28 H 1.09004 * 110.48598 * 156.62367 * 15 14 12 29 29 H 1.09002 * 110.48492 * 279.25946 * 15 14 12 30 30 H 1.08996 * 110.03180 * 95.67370 * 16 15 14 31 31 H 1.09003 * 110.02949 * 217.10545 * 16 15 14 32 32 H 0.96695 * 113.99677 * 62.83446 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6371 2.0471 1.2985 5 1 1.0741 1.5114 2.0485 6 6 2.0269 3.3495 1.5286 7 7 2.7120 4.0019 0.6150 8 14 1.5819 4.1871 3.1378 9 1 2.6585 3.9510 4.1330 10 1 1.4294 5.6467 2.9105 11 1 0.3041 3.6296 3.6493 12 6 1.9955 -0.7660 -1.1376 13 1 1.8073 -0.2371 -2.0720 14 6 1.3638 -2.1796 -1.1781 15 6 2.4098 -2.9986 -1.9745 16 6 3.7680 -2.4504 -1.4903 17 6 3.5046 -1.0308 -0.9582 18 1 4.0817 -0.3045 -1.5304 19 8 3.8539 -0.9539 0.4254 20 1 -0.3633 -1.0276 0.0085 21 1 -0.3632 0.5211 0.8858 22 1 -0.3633 0.5066 -0.8942 23 1 3.0797 1.3444 -0.1082 24 1 1.5612 1.9274 -0.8309 25 1 2.9866 4.9180 0.7771 26 1 1.2461 -2.5790 -0.1707 27 1 0.4080 -2.1608 -1.7016 28 1 2.3215 -4.0597 -1.7411 29 1 2.2906 -2.8313 -3.0450 30 1 4.1623 -3.0807 -0.6932 31 1 4.4730 -2.4130 -2.3207 32 1 4.7911 -1.1115 0.6037 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037690275.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:59 Heat of formation + Delta-G solvation = -74.232929 kcal Electronic energy + Delta-G solvation = -13421.899542 eV Core-core repulsion = 11188.186592 eV Total energy + Delta-G solvation = -2233.712950 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.19128 -37.01592 -35.54160 -34.35739 -29.79337 -28.80419 -28.20309 -25.96412 -23.11706 -21.38514 -20.54446 -18.50838 -18.20567 -16.75375 -16.56816 -15.99840 -15.46054 -15.23646 -14.53264 -14.35916 -13.82683 -13.39514 -13.35491 -12.92993 -12.77897 -12.49235 -12.28373 -12.19700 -11.99429 -11.79222 -11.50318 -11.17959 -11.14139 -10.65063 -10.57969 -8.87915 -8.17897 -6.26687 1.39405 1.42140 1.52916 2.41472 3.13891 3.24503 3.58529 3.74624 3.78862 4.17428 4.41698 4.43831 4.52230 4.58808 4.67281 4.80737 4.92483 5.03698 5.07614 5.10877 5.16198 5.17527 5.30421 5.39821 5.48077 5.68730 6.11595 6.44015 6.71808 6.89356 7.16611 7.41899 8.93430 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.055233 B = 0.009446 C = 0.008809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.821747 B = 2963.474311 C = 3177.976335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.525 5.525 3 C 0.217 3.783 4 C -0.516 4.516 5 H 0.058 0.942 6 C -0.003 4.003 7 N -0.937 5.937 8 Si 0.971 3.029 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.265 1.265 12 C 0.068 3.932 13 H 0.030 0.970 14 C -0.108 4.108 15 C -0.113 4.113 16 C -0.144 4.144 17 C 0.104 3.896 18 H 0.031 0.969 19 O -0.555 6.555 20 H 0.082 0.918 21 H 0.052 0.948 22 H 0.004 0.996 23 H 0.009 0.991 24 H -0.053 1.053 25 H 0.263 0.737 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.303 -12.891 -4.462 13.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.249 5.249 3 C 0.091 3.909 4 C -0.554 4.554 5 H 0.076 0.924 6 C -0.200 4.200 7 N -0.578 5.578 8 Si 0.795 3.205 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.189 1.189 12 C -0.041 4.041 13 H 0.048 0.952 14 C -0.146 4.146 15 C -0.150 4.150 16 C -0.182 4.182 17 C 0.044 3.956 18 H 0.049 0.951 19 O -0.360 6.360 20 H 0.100 0.900 21 H 0.071 0.929 22 H 0.023 0.977 23 H 0.027 0.973 24 H -0.035 1.035 25 H 0.072 0.928 26 H 0.087 0.913 27 H 0.092 0.908 28 H 0.106 0.894 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -0.105 -12.831 -4.008 13.443 hybrid contribution 0.340 1.367 -0.239 1.428 sum 0.234 -11.464 -4.247 12.228 Atomic orbital electron populations 1.22260 0.88276 1.01074 0.99404 1.62011 1.07036 1.14924 1.40919 1.19277 0.93941 0.83588 0.94118 1.21452 1.34300 0.97317 1.02336 0.92422 1.25930 0.95204 0.98044 1.00784 1.70100 1.39763 1.11807 1.36173 0.85368 0.78910 0.77231 0.78993 1.19897 1.20575 1.18938 1.22746 0.94488 0.95580 0.91294 0.95197 1.22539 0.98616 0.92468 1.00954 1.22259 0.93033 0.99967 0.99772 1.22848 0.98911 0.94764 1.01679 1.22424 0.94366 0.96064 0.82714 0.95067 1.86840 1.30199 1.94701 1.24214 0.89990 0.92885 0.97733 0.97334 1.03536 0.92831 0.91252 0.90766 0.89390 0.90500 0.90016 0.89905 0.77788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.59 9.06 127.69 1.16 2.75 16 2 N -0.53 -24.70 3.95 -895.26 -3.54 -28.24 16 3 C 0.22 12.46 4.39 85.56 0.38 12.84 16 4 C -0.52 -31.19 8.51 25.60 0.22 -30.97 16 5 H 0.06 3.45 7.10 -2.91 -0.02 3.43 16 6 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 7 N -0.94 -58.82 13.29 21.45 0.28 -58.53 16 8 Si 0.97 46.34 29.54 68.60 2.03 48.37 16 9 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 12 C 0.07 2.60 2.53 45.99 0.12 2.71 16 13 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 14 C -0.11 -3.09 4.89 31.88 0.16 -2.93 16 15 C -0.11 -2.44 6.83 31.67 0.22 -2.23 16 16 C -0.14 -3.44 6.61 31.32 0.21 -3.24 16 17 C 0.10 3.62 3.30 31.32 0.10 3.72 16 18 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 19 O -0.55 -21.67 11.69 -148.98 -1.74 -23.42 16 20 H 0.08 2.79 6.59 -2.39 -0.02 2.78 16 21 H 0.05 2.38 6.84 -2.39 -0.02 2.36 16 22 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 23 H 0.01 0.53 6.76 -2.39 -0.02 0.51 16 24 H -0.05 -3.31 8.12 -2.39 -0.02 -3.33 16 25 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 26 H 0.07 2.13 8.04 -2.38 -0.02 2.11 16 27 H 0.07 1.89 7.91 -2.39 -0.02 1.87 16 28 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 29 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.08 1.81 7.95 -2.39 -0.02 1.80 16 31 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.38 10.91 9.11 -74.06 -0.67 10.24 16 Total: -1.00 -71.42 256.96 0.46 -70.96 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 0.41 Total: 7.88 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: 3.01 Total: -17.03 kcal Atomic # 7 Polarization: -83.52 SS G_CDS: -3.25 Total: -86.77 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -1.74 Total: -23.42 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -71.42 0.46 -70.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037690275.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.268 kcal (2) G-P(sol) polarization free energy of solvation -71.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds