Wall clock time and date at job start Mon Mar 30 2020 02:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30202 * 1 3 3 Si 1.86799 * 120.00185 * 2 1 4 4 H 1.48501 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47143 * 300.00084 * 3 2 1 6 6 H 1.48494 * 109.47193 * 59.99939 * 3 2 1 7 7 C 1.41172 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99630 * 164.99868 * 7 2 1 9 9 C 1.38934 * 120.00298 * 345.26509 * 7 2 1 10 10 C 1.38309 * 125.09299 * 169.07518 * 9 7 2 11 11 C 1.41198 * 125.08650 * 0.02562 * 10 9 7 12 12 O 1.21520 * 119.99995 * 354.79861 * 11 10 9 13 13 Cl 1.73603 * 120.00242 * 174.79852 * 11 10 9 14 14 C 1.51152 * 109.82633 * 179.84615 * 10 9 7 15 15 C 1.54419 * 105.19592 * 343.37216 * 14 10 9 16 16 C 1.51154 * 125.08605 * 349.37905 * 9 7 2 17 17 H 0.96993 * 119.99333 * 5.01648 * 1 2 3 18 18 H 1.09005 * 110.46607 * 224.34043 * 14 10 9 19 19 H 1.08997 * 110.09307 * 102.21114 * 14 10 9 20 20 H 1.09005 * 110.80802 * 267.63321 * 15 14 10 21 21 H 1.09004 * 110.80421 * 144.13610 * 15 14 10 22 22 H 1.09001 * 110.31103 * 315.94284 * 16 9 7 23 23 H 1.09003 * 110.31454 * 78.11624 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3020 0.0000 0.0000 3 14 2.2361 1.6177 0.0000 4 1 3.6961 1.3463 -0.0006 5 1 1.8773 2.3965 -1.2125 6 1 1.8774 2.3964 1.2124 7 6 2.0078 -1.2226 -0.0005 8 1 3.0602 -1.2385 -0.2427 9 6 1.3474 -2.4062 0.3049 10 6 1.8686 -3.6754 0.1308 11 6 3.1519 -3.9622 -0.3837 12 8 3.8545 -3.0626 -0.8003 13 17 3.7259 -5.6002 -0.4210 14 6 0.8607 -4.7093 0.5777 15 6 -0.1625 -3.9330 1.4350 16 6 -0.0509 -2.4996 0.8714 17 1 -0.4849 0.8368 -0.0735 18 1 1.3459 -5.4816 1.1746 19 1 0.3696 -5.1525 -0.2886 20 1 0.1168 -3.9578 2.4883 21 1 -1.1679 -4.3286 1.2906 22 1 -0.1860 -1.7682 1.6682 23 1 -0.7891 -2.3439 0.0846 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000039056326.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:31 Heat of formation + Delta-G solvation = -70.052320 kcal Electronic energy + Delta-G solvation = -10762.285168 eV Core-core repulsion = 8600.077816 eV Total energy + Delta-G solvation = -2162.207352 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.034 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.06474 -36.18331 -34.62541 -34.01773 -29.28308 -27.92151 -24.87947 -21.83367 -20.01814 -18.19952 -16.60522 -15.57217 -14.79256 -14.35383 -13.93844 -13.09811 -12.50693 -12.14714 -11.84899 -11.53025 -11.41392 -10.99246 -10.41122 -10.30079 -10.03787 -9.93202 -9.82806 -9.70600 -9.55557 -8.29663 -7.78193 -7.46156 -5.07473 2.33826 2.79906 2.89829 2.97704 3.54459 3.55135 4.04583 4.88849 5.89217 5.94930 6.03651 6.42069 6.60800 6.77511 6.91978 6.99331 7.01960 7.13053 7.29107 7.56716 7.66356 8.04729 8.47233 8.55697 9.14184 9.38985 Molecular weight = 200.03amu Principal moments of inertia in cm(-1) A = 0.039598 B = 0.013056 C = 0.010052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.938093 B = 2144.062324 C = 2784.977614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.736 5.736 2 C 0.066 3.934 3 Si 0.928 3.072 4 H -0.247 1.247 5 H -0.264 1.264 6 H -0.264 1.264 7 C -0.360 4.360 8 H 0.121 0.879 9 C 0.129 3.871 10 C -0.450 4.450 11 C 0.437 3.563 12 O -0.516 6.516 13 Cl -0.233 7.233 14 C -0.032 4.032 15 C -0.129 4.129 16 C -0.068 4.068 17 H 0.298 0.702 18 H 0.040 0.960 19 H 0.036 0.964 20 H 0.054 0.946 21 H 0.052 0.948 22 H 0.062 0.938 23 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.459 0.963 2.055 3.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.163 4.163 3 Si 0.749 3.251 4 H -0.170 1.170 5 H -0.189 1.189 6 H -0.189 1.189 7 C -0.383 4.383 8 H 0.139 0.861 9 C 0.123 3.877 10 C -0.455 4.455 11 C 0.309 3.691 12 O -0.407 6.407 13 Cl -0.209 7.209 14 C -0.070 4.070 15 C -0.166 4.166 16 C -0.105 4.105 17 H 0.110 0.890 18 H 0.059 0.941 19 H 0.055 0.945 20 H 0.073 0.927 21 H 0.071 0.929 22 H 0.081 0.919 23 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.318 1.372 1.915 3.305 hybrid contribution 0.223 0.423 -0.048 0.481 sum -2.095 1.795 1.868 3.332 Atomic orbital electron populations 1.69505 1.08748 1.31910 1.25529 1.26853 0.94996 1.03676 0.90791 0.85887 0.81803 0.78118 0.79272 1.17002 1.18890 1.18872 1.20581 0.99523 0.89870 1.28369 0.86149 1.19677 0.91232 0.91296 0.85481 1.19648 0.96960 0.94562 1.34331 1.21563 0.87264 0.79777 0.80489 1.90483 1.59077 1.40574 1.50530 1.98373 1.90710 1.35349 1.96478 1.20317 0.94239 0.95908 0.96520 1.22376 0.98074 0.97315 0.98867 1.21060 0.95702 0.94217 0.99522 0.89019 0.94107 0.94533 0.92739 0.92908 0.91936 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -15.92 10.96 55.62 0.61 -15.31 14 2 C 0.07 1.45 5.42 -17.13 -0.09 1.36 14 3 Si 0.93 16.76 29.60 -169.99 -5.03 11.73 14 4 H -0.25 -4.68 7.11 56.52 0.40 -4.28 14 5 H -0.26 -4.62 7.11 56.52 0.40 -4.21 14 6 H -0.26 -4.55 7.11 56.52 0.40 -4.15 14 7 C -0.36 -9.15 8.67 -38.21 -0.33 -9.48 14 8 H 0.12 3.27 5.78 -52.48 -0.30 2.97 14 9 C 0.13 3.26 5.87 -104.12 -0.61 2.65 14 10 C -0.45 -11.41 6.06 -103.25 -0.63 -12.03 14 11 C 0.44 11.52 7.53 31.86 0.24 11.76 14 12 O -0.52 -14.79 15.09 5.35 0.08 -14.71 14 13 Cl -0.23 -5.32 28.50 -51.86 -1.48 -6.80 14 14 C -0.03 -0.71 6.17 -26.92 -0.17 -0.87 14 15 C -0.13 -2.53 7.08 -25.24 -0.18 -2.71 14 16 C -0.07 -1.50 4.83 -26.91 -0.13 -1.63 14 17 H 0.30 5.62 8.29 -40.82 -0.34 5.28 14 18 H 0.04 0.85 7.96 -51.93 -0.41 0.44 14 19 H 0.04 0.77 8.14 -51.93 -0.42 0.35 14 20 H 0.05 1.01 8.14 -51.93 -0.42 0.59 14 21 H 0.05 0.91 8.14 -51.93 -0.42 0.49 14 22 H 0.06 1.37 7.66 -51.93 -0.40 0.97 14 23 H 0.08 1.73 7.78 -51.93 -0.40 1.33 14 LS Contribution 218.99 15.07 3.30 3.30 Total: -1.00 -26.66 218.99 -6.34 -32.99 By element: Atomic # 1 Polarization: 1.68 SS G_CDS: -1.92 Total: -0.24 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.90 Total: -10.96 kcal Atomic # 7 Polarization: -15.92 SS G_CDS: 0.61 Total: -15.31 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: 0.08 Total: -14.71 kcal Atomic # 14 Polarization: 16.76 SS G_CDS: -5.03 Total: 11.73 kcal Atomic # 17 Polarization: -5.32 SS G_CDS: -1.48 Total: -6.80 kcal Total LS contribution 3.30 Total: 3.30 kcal Total: -26.66 -6.34 -32.99 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039056326.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.058 kcal (2) G-P(sol) polarization free energy of solvation -26.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds