Wall clock time and date at job start Mon Mar 30 2020 02:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30202 * 1 3 3 Si 1.86799 * 120.00185 * 2 1 4 4 H 1.48501 * 109.47159 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47143 * 300.00084 * 3 2 1 6 6 H 1.48494 * 109.47193 * 59.99939 * 3 2 1 7 7 C 1.41172 * 119.99582 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99630 * 164.99868 * 7 2 1 9 9 C 1.38934 * 120.00298 * 345.26509 * 7 2 1 10 10 C 1.38309 * 125.09299 * 169.07518 * 9 7 2 11 11 C 1.41198 * 125.08650 * 0.02562 * 10 9 7 12 12 O 1.21520 * 119.99995 * 354.79861 * 11 10 9 13 13 Cl 1.73603 * 120.00242 * 174.79852 * 11 10 9 14 14 C 1.51152 * 109.82633 * 179.84615 * 10 9 7 15 15 C 1.54419 * 105.19592 * 343.37216 * 14 10 9 16 16 C 1.51154 * 125.08605 * 349.37905 * 9 7 2 17 17 H 0.96993 * 119.99333 * 5.01648 * 1 2 3 18 18 H 1.09005 * 110.46607 * 224.34043 * 14 10 9 19 19 H 1.08997 * 110.09307 * 102.21114 * 14 10 9 20 20 H 1.09005 * 110.80802 * 267.63321 * 15 14 10 21 21 H 1.09004 * 110.80421 * 144.13610 * 15 14 10 22 22 H 1.09001 * 110.31103 * 315.94284 * 16 9 7 23 23 H 1.09003 * 110.31454 * 78.11624 * 16 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3020 0.0000 0.0000 3 14 2.2361 1.6177 0.0000 4 1 3.6961 1.3463 -0.0006 5 1 1.8773 2.3965 -1.2125 6 1 1.8774 2.3964 1.2124 7 6 2.0078 -1.2226 -0.0005 8 1 3.0602 -1.2385 -0.2427 9 6 1.3474 -2.4062 0.3049 10 6 1.8686 -3.6754 0.1308 11 6 3.1519 -3.9622 -0.3837 12 8 3.8545 -3.0626 -0.8003 13 17 3.7259 -5.6002 -0.4210 14 6 0.8607 -4.7093 0.5777 15 6 -0.1625 -3.9330 1.4350 16 6 -0.0509 -2.4996 0.8714 17 1 -0.4849 0.8368 -0.0735 18 1 1.3459 -5.4816 1.1746 19 1 0.3696 -5.1525 -0.2886 20 1 0.1168 -3.9578 2.4883 21 1 -1.1679 -4.3286 1.2906 22 1 -0.1860 -1.7682 1.6682 23 1 -0.7891 -2.3439 0.0846 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000039056326.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:31 Heat of formation + Delta-G solvation = -84.622005 kcal Electronic energy + Delta-G solvation = -10762.916957 eV Core-core repulsion = 8600.077816 eV Total energy + Delta-G solvation = -2162.839141 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.034 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -39.95693 -38.07324 -36.55361 -35.77366 -31.08218 -29.75418 -26.66806 -23.72778 -21.72321 -20.02294 -18.51497 -17.31098 -16.67627 -16.07655 -15.65601 -15.06630 -14.13622 -13.99943 -13.50529 -13.27072 -13.01270 -12.59074 -12.02254 -12.00405 -11.84276 -11.78225 -11.60786 -11.45481 -11.22318 -10.27289 -9.64129 -9.17721 -7.01645 0.56263 1.30303 1.43239 1.48068 1.58698 2.07604 2.19452 2.98957 4.18249 4.28272 4.43219 4.71679 4.97958 5.01488 5.21824 5.23448 5.26816 5.41545 5.63009 5.73009 5.79498 6.14782 6.55746 6.67785 7.18451 7.70924 Molecular weight = 200.03amu Principal moments of inertia in cm(-1) A = 0.039598 B = 0.013056 C = 0.010052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.938093 B = 2144.062324 C = 2784.977614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.737 5.737 2 C 0.035 3.965 3 Si 0.993 3.007 4 H -0.269 1.269 5 H -0.248 1.248 6 H -0.242 1.242 7 C -0.378 4.378 8 H 0.094 0.906 9 C 0.096 3.904 10 C -0.471 4.471 11 C 0.413 3.587 12 O -0.558 6.558 13 Cl -0.208 7.208 14 C -0.030 4.030 15 C -0.118 4.118 16 C -0.058 4.058 17 H 0.317 0.683 18 H 0.047 0.953 19 H 0.039 0.961 20 H 0.066 0.934 21 H 0.083 0.917 22 H 0.062 0.938 23 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.814 1.835 2.692 5.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.357 5.357 2 C -0.194 4.194 3 Si 0.811 3.189 4 H -0.193 1.193 5 H -0.172 1.172 6 H -0.166 1.166 7 C -0.401 4.401 8 H 0.112 0.888 9 C 0.091 3.909 10 C -0.476 4.476 11 C 0.289 3.711 12 O -0.454 6.454 13 Cl -0.184 7.184 14 C -0.068 4.068 15 C -0.155 4.155 16 C -0.095 4.095 17 H 0.130 0.870 18 H 0.065 0.935 19 H 0.058 0.942 20 H 0.085 0.915 21 H 0.102 0.898 22 H 0.080 0.920 23 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.718 2.202 2.562 5.024 hybrid contribution 0.593 0.174 -0.263 0.672 sum -3.125 2.376 2.300 4.550 Atomic orbital electron populations 1.69428 1.09281 1.34040 1.22959 1.27488 0.95884 1.05524 0.90460 0.84968 0.78988 0.74264 0.80688 1.19325 1.17174 1.16580 1.20710 0.98809 0.91953 1.28587 0.88813 1.20198 0.93134 0.91432 0.86179 1.20144 0.97304 0.95989 1.34121 1.21876 0.87764 0.80406 0.81058 1.90449 1.60175 1.42047 1.52692 1.98350 1.90529 1.33067 1.96411 1.20332 0.93973 0.95396 0.97084 1.22363 0.99120 0.95148 0.98912 1.20973 0.93467 0.95923 0.99135 0.87005 0.93481 0.94223 0.91546 0.89822 0.91957 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -30.45 10.96 22.04 0.24 -30.21 14 2 C 0.03 1.51 5.42 85.66 0.46 1.97 14 3 Si 0.99 33.14 29.60 68.60 2.03 35.17 14 4 H -0.27 -9.90 7.11 99.48 0.71 -9.19 14 5 H -0.25 -7.64 7.11 99.48 0.71 -6.93 14 6 H -0.24 -7.26 7.11 99.48 0.71 -6.55 14 7 C -0.38 -19.49 8.67 23.16 0.20 -19.29 14 8 H 0.09 5.31 5.78 -2.91 -0.02 5.30 14 9 C 0.10 4.89 5.87 -19.54 -0.11 4.78 14 10 C -0.47 -24.05 6.06 -18.98 -0.11 -24.17 14 11 C 0.41 22.25 7.53 68.55 0.52 22.76 14 12 O -0.56 -33.28 15.09 -3.78 -0.06 -33.34 14 13 Cl -0.21 -9.50 28.50 -2.72 -0.08 -9.57 14 14 C -0.03 -1.29 6.17 30.47 0.19 -1.10 14 15 C -0.12 -4.34 7.08 31.56 0.22 -4.12 14 16 C -0.06 -2.48 4.83 30.48 0.15 -2.33 14 17 H 0.32 11.05 8.29 -92.71 -0.77 10.28 14 18 H 0.05 1.89 7.96 -2.38 -0.02 1.87 14 19 H 0.04 1.62 8.14 -2.39 -0.02 1.60 14 20 H 0.07 2.28 8.14 -2.38 -0.02 2.26 14 21 H 0.08 2.57 8.14 -2.39 -0.02 2.55 14 22 H 0.06 2.62 7.66 -2.39 -0.02 2.61 14 23 H 0.07 3.15 7.78 -2.39 -0.02 3.14 14 Total: -1.00 -57.36 218.99 4.87 -52.50 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: 1.22 Total: 6.94 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 1.51 Total: -21.49 kcal Atomic # 7 Polarization: -30.45 SS G_CDS: 0.24 Total: -30.21 kcal Atomic # 8 Polarization: -33.28 SS G_CDS: -0.06 Total: -33.34 kcal Atomic # 14 Polarization: 33.14 SS G_CDS: 2.03 Total: 35.17 kcal Atomic # 17 Polarization: -9.50 SS G_CDS: -0.08 Total: -9.57 kcal Total: -57.36 4.87 -52.50 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000039056326.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.126 kcal (2) G-P(sol) polarization free energy of solvation -57.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds