Wall clock time and date at job start Mon Mar 30 2020 02:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46953 * 111.00121 * 2 1 4 4 C 1.53050 * 109.36239 * 183.19402 * 3 2 1 5 5 N 1.46955 * 109.36601 * 301.59558 * 4 3 2 6 6 N 1.45403 * 111.00149 * 183.19097 * 5 4 3 7 7 C 1.46901 * 110.99824 * 120.00369 * 6 5 4 8 8 C 1.50701 * 109.46921 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47294 * 60.00559 * 12 10 8 14 14 H 1.48503 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47431 * 300.00157 * 12 10 8 16 16 C 1.46953 * 110.87809 * 59.32363 * 5 4 3 17 17 C 1.46952 * 111.00315 * 123.80618 * 2 1 3 18 18 H 1.08997 * 109.47172 * 59.99616 * 1 2 3 19 19 H 1.08999 * 109.47527 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46660 * 299.99821 * 1 2 3 21 21 H 1.08999 * 109.48892 * 63.22323 * 3 2 1 22 22 H 1.08999 * 109.50734 * 303.16627 * 3 2 1 23 23 H 1.09005 * 109.48864 * 181.63297 * 4 3 2 24 24 H 1.09002 * 109.50950 * 61.58159 * 4 3 2 25 25 H 1.00898 * 110.99994 * 243.95468 * 6 5 4 26 26 H 1.09002 * 109.47401 * 59.99830 * 7 6 5 27 27 H 1.09001 * 109.46874 * 299.99842 * 7 6 5 28 28 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 29 29 H 1.09002 * 109.49129 * 60.64464 * 16 5 4 30 30 H 1.09002 * 109.49106 * 180.71643 * 16 5 4 31 31 H 1.09007 * 109.48601 * 296.77019 * 17 2 1 32 32 H 1.08994 * 109.49358 * 56.81408 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3289 -0.0805 5 7 4.0502 0.5658 1.0596 6 7 5.5042 0.5657 1.0595 7 6 6.0307 1.1712 2.2900 8 6 7.5372 1.1528 2.2541 9 1 8.0520 0.7337 1.4022 10 6 8.2582 1.6720 3.3084 11 7 7.6314 2.1828 4.3455 12 14 10.1255 1.6499 3.2635 13 1 10.6017 2.4228 2.0882 14 1 10.6578 2.2618 4.5075 15 1 10.6017 0.2471 3.1595 16 6 3.5235 -0.8062 1.0596 17 6 1.9957 -0.7633 1.1399 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 1.6938 1.8773 0.9174 22 1 1.6013 1.9132 -0.8600 23 1 3.9178 2.3447 -0.0514 24 1 3.8256 0.8481 -1.0108 25 1 5.8658 -0.3676 0.9324 26 1 5.6812 0.6037 3.1525 27 1 5.6812 2.2008 2.3667 28 1 8.1387 2.5477 5.0874 29 1 3.8253 -1.3116 0.1422 30 1 3.9178 -1.3471 1.9198 31 1 1.6939 -0.2821 2.0703 32 1 1.6010 -1.7789 1.1111 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041620089.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:04 Heat of formation + Delta-G solvation = 38.500520 kcal Electronic energy + Delta-G solvation = -12939.344494 eV Core-core repulsion = 10742.812785 eV Total energy + Delta-G solvation = -2196.531710 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.138 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.77089 -35.38910 -33.04299 -30.93890 -30.67228 -27.49969 -25.26811 -23.30155 -23.01475 -21.21411 -19.53723 -16.74064 -15.80976 -15.06862 -14.79804 -14.72444 -14.56695 -14.11363 -13.78189 -12.77911 -12.36928 -12.26951 -12.10911 -11.64495 -11.41416 -11.07095 -11.04348 -10.78372 -10.67514 -10.55955 -9.93234 -9.21220 -8.64974 -8.35367 -8.22423 -7.15773 -6.02030 -4.04872 3.34431 3.38117 3.40858 3.98220 4.02793 4.49540 5.00047 5.09416 5.30258 5.33915 5.37736 5.54767 5.61868 5.63896 5.72699 5.77496 5.93755 6.02145 6.17449 6.29566 6.45051 7.03083 7.07362 7.39733 7.49249 7.55138 7.81092 8.18634 8.30434 8.74587 9.03974 9.59234 11.09028 Molecular weight = 199.14amu Principal moments of inertia in cm(-1) A = 0.086677 B = 0.006565 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.959204 B = 4264.340892 C = 4276.862007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.074 3.926 5 N -0.390 5.390 6 N -0.525 5.525 7 C 0.208 3.792 8 C -0.519 4.519 9 H 0.061 0.939 10 C 0.059 3.941 11 N -0.895 5.895 12 Si 0.901 3.099 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.277 1.277 16 C 0.034 3.966 17 C 0.062 3.938 18 H 0.066 0.934 19 H 0.065 0.935 20 H 0.024 0.976 21 H 0.041 0.959 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.038 0.962 25 H 0.319 0.681 26 H -0.009 1.009 27 H 0.033 0.967 28 H 0.262 0.738 29 H 0.041 0.959 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.600 -4.296 -6.873 14.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.072 4.072 4 C -0.055 4.055 5 N -0.204 5.204 6 N -0.246 5.246 7 C 0.081 3.919 8 C -0.558 4.558 9 H 0.079 0.921 10 C -0.143 4.143 11 N -0.534 5.534 12 Si 0.729 3.271 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.203 1.203 16 C -0.096 4.096 17 C -0.068 4.068 18 H 0.085 0.915 19 H 0.084 0.916 20 H 0.043 0.957 21 H 0.060 0.940 22 H 0.096 0.904 23 H 0.101 0.899 24 H 0.057 0.943 25 H 0.135 0.865 26 H 0.009 0.991 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.060 0.940 30 H 0.094 0.906 31 H 0.060 0.940 32 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.515 -3.603 -7.048 13.973 hybrid contribution 0.791 -0.737 0.779 1.332 sum -10.724 -4.340 -6.269 13.158 Atomic orbital electron populations 1.22327 0.87628 1.01748 1.00541 1.62177 1.07443 1.14527 1.43047 1.22244 0.95410 0.88756 1.00807 1.21987 0.91829 0.99448 0.92282 1.65347 1.02695 1.11417 1.40969 1.64221 0.94041 1.23989 1.42313 1.19514 0.93352 0.94986 0.84096 1.21097 0.90860 1.40066 1.03808 0.92114 1.24951 0.98857 0.95266 0.95231 1.69972 1.35681 1.40039 1.07668 0.86516 0.85035 0.78264 0.77291 1.20124 1.21292 1.20277 1.22549 0.94327 0.91849 1.00826 1.22126 0.94749 0.98002 0.91886 0.91499 0.91629 0.95701 0.94029 0.90420 0.89944 0.94340 0.86473 0.99148 0.94900 0.92808 0.94041 0.90586 0.93979 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.60 60.06 0.58 0.85 16 2 N -0.55 -7.44 4.97 -242.76 -1.21 -8.64 16 3 C 0.06 0.81 5.62 -3.77 -0.02 0.79 16 4 C 0.07 1.27 6.07 -3.77 -0.02 1.24 16 5 N -0.39 -7.69 4.83 -113.63 -0.55 -8.24 16 6 N -0.52 -11.97 6.74 -11.41 -0.08 -12.04 16 7 C 0.21 5.66 5.89 -4.97 -0.03 5.63 16 8 C -0.52 -14.90 9.32 -34.44 -0.32 -15.23 16 9 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 10 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 11 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 12 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 16 C 0.03 0.57 5.58 -3.77 -0.02 0.55 16 17 C 0.06 0.87 5.62 -3.77 -0.02 0.84 16 18 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 19 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 20 H 0.02 0.26 8.14 -51.93 -0.42 -0.17 16 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 22 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.32 6.92 8.13 -174.65 -1.42 5.50 16 26 H -0.01 -0.28 8.14 -51.93 -0.42 -0.70 16 27 H 0.03 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 LS Contribution 263.92 15.07 3.98 3.98 Total: -1.00 -30.65 263.92 -8.56 -39.21 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -6.46 Total: -0.97 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 0.04 Total: -3.72 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -1.10 Total: -55.27 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.65 -8.56 -39.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041620089.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.710 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds