Wall clock time and date at job start Mon Mar 30 2020 02:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46953 * 111.00121 * 2 1 4 4 C 1.53050 * 109.36239 * 183.19402 * 3 2 1 5 5 N 1.46955 * 109.36601 * 301.59558 * 4 3 2 6 6 N 1.45403 * 111.00149 * 183.19097 * 5 4 3 7 7 C 1.46901 * 110.99824 * 120.00369 * 6 5 4 8 8 C 1.50701 * 109.46921 * 179.97438 * 7 6 5 9 9 H 1.07998 * 120.00129 * 0.02562 * 8 7 6 10 10 C 1.37880 * 119.99861 * 179.97438 * 8 7 6 11 11 N 1.31510 * 119.99913 * 0.02562 * 10 8 7 12 12 Si 1.86797 * 119.99734 * 180.02562 * 10 8 7 13 13 H 1.48506 * 109.47294 * 60.00559 * 12 10 8 14 14 H 1.48503 * 109.46954 * 180.02562 * 12 10 8 15 15 H 1.48503 * 109.47431 * 300.00157 * 12 10 8 16 16 C 1.46953 * 110.87809 * 59.32363 * 5 4 3 17 17 C 1.46952 * 111.00315 * 123.80618 * 2 1 3 18 18 H 1.08997 * 109.47172 * 59.99616 * 1 2 3 19 19 H 1.08999 * 109.47527 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46660 * 299.99821 * 1 2 3 21 21 H 1.08999 * 109.48892 * 63.22323 * 3 2 1 22 22 H 1.08999 * 109.50734 * 303.16627 * 3 2 1 23 23 H 1.09005 * 109.48864 * 181.63297 * 4 3 2 24 24 H 1.09002 * 109.50950 * 61.58159 * 4 3 2 25 25 H 1.00898 * 110.99994 * 243.95468 * 6 5 4 26 26 H 1.09002 * 109.47401 * 59.99830 * 7 6 5 27 27 H 1.09001 * 109.46874 * 299.99842 * 7 6 5 28 28 H 0.97002 * 119.99768 * 179.97438 * 11 10 8 29 29 H 1.09002 * 109.49129 * 60.64464 * 16 5 4 30 30 H 1.09002 * 109.49106 * 180.71643 * 16 5 4 31 31 H 1.09007 * 109.48601 * 296.77019 * 17 2 1 32 32 H 1.08994 * 109.49358 * 56.81408 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3719 0.0000 4 6 3.5234 1.3289 -0.0805 5 7 4.0502 0.5658 1.0596 6 7 5.5042 0.5657 1.0595 7 6 6.0307 1.1712 2.2900 8 6 7.5372 1.1528 2.2541 9 1 8.0520 0.7337 1.4022 10 6 8.2582 1.6720 3.3084 11 7 7.6314 2.1828 4.3455 12 14 10.1255 1.6499 3.2635 13 1 10.6017 2.4228 2.0882 14 1 10.6578 2.2618 4.5075 15 1 10.6017 0.2471 3.1595 16 6 3.5235 -0.8062 1.0596 17 6 1.9957 -0.7633 1.1399 18 1 -0.3633 0.5139 -0.8899 19 1 -0.3634 -1.0276 0.0005 20 1 -0.3633 0.5138 0.8901 21 1 1.6938 1.8773 0.9174 22 1 1.6013 1.9132 -0.8600 23 1 3.9178 2.3447 -0.0514 24 1 3.8256 0.8481 -1.0108 25 1 5.8658 -0.3676 0.9324 26 1 5.6812 0.6037 3.1525 27 1 5.6812 2.2008 2.3667 28 1 8.1387 2.5477 5.0874 29 1 3.8253 -1.3116 0.1422 30 1 3.9178 -1.3471 1.9198 31 1 1.6939 -0.2821 2.0703 32 1 1.6010 -1.7789 1.1111 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000041620089.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:04 Heat of formation + Delta-G solvation = 15.109504 kcal Electronic energy + Delta-G solvation = -12940.358805 eV Core-core repulsion = 10742.812785 eV Total energy + Delta-G solvation = -2197.546020 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.138 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.04355 -36.95260 -35.06164 -32.71768 -31.94266 -29.07637 -26.94777 -24.57123 -24.42615 -23.16522 -20.83691 -18.75359 -17.40945 -16.76304 -16.28502 -16.02229 -15.83151 -15.48955 -15.33367 -14.44374 -14.21930 -13.69212 -13.48106 -13.02802 -12.88601 -12.76267 -12.63619 -12.29422 -12.20152 -11.93212 -11.84399 -11.33210 -10.72277 -10.09427 -9.39161 -8.92187 -8.23418 -6.36312 1.41972 1.46322 1.54303 2.31561 2.58373 2.93647 3.10203 3.72403 4.04123 4.10846 4.25968 4.27342 4.42970 4.60509 4.63462 4.68328 4.76909 4.86701 4.95683 5.01560 5.03429 5.19375 5.32279 5.63435 5.86095 6.01850 6.03886 6.08880 6.29128 6.78842 6.92845 7.34363 8.88593 Molecular weight = 199.14amu Principal moments of inertia in cm(-1) A = 0.086677 B = 0.006565 C = 0.006545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.959204 B = 4264.340892 C = 4276.862007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.554 5.554 3 C 0.065 3.935 4 C 0.073 3.927 5 N -0.409 5.409 6 N -0.525 5.525 7 C 0.229 3.771 8 C -0.541 4.541 9 H 0.066 0.934 10 C 0.004 3.996 11 N -0.933 5.933 12 Si 0.979 3.021 13 H -0.267 1.267 14 H -0.281 1.281 15 H -0.265 1.265 16 C 0.035 3.965 17 C 0.068 3.932 18 H 0.082 0.918 19 H 0.081 0.919 20 H 0.025 0.975 21 H 0.032 0.968 22 H 0.105 0.895 23 H 0.066 0.934 24 H 0.039 0.961 25 H 0.325 0.675 26 H -0.040 1.040 27 H -0.002 1.002 28 H 0.266 0.734 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.031 0.969 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.857 -5.033 -7.919 15.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.279 5.279 3 C -0.064 4.064 4 C -0.055 4.055 5 N -0.224 5.224 6 N -0.246 5.246 7 C 0.101 3.899 8 C -0.580 4.580 9 H 0.084 0.916 10 C -0.194 4.194 11 N -0.572 5.572 12 Si 0.802 3.198 13 H -0.192 1.192 14 H -0.207 1.207 15 H -0.190 1.190 16 C -0.095 4.095 17 C -0.062 4.062 18 H 0.100 0.900 19 H 0.100 0.900 20 H 0.044 0.956 21 H 0.050 0.950 22 H 0.123 0.877 23 H 0.085 0.915 24 H 0.057 0.943 25 H 0.142 0.858 26 H -0.022 1.022 27 H 0.016 0.984 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -11.794 -4.356 -8.118 14.965 hybrid contribution 0.761 -0.521 1.072 1.414 sum -11.032 -4.877 -7.046 13.969 Atomic orbital electron populations 1.22419 0.85291 1.03122 1.01330 1.62204 1.09498 1.13693 1.42506 1.22177 0.92954 0.89701 1.01555 1.22038 0.94062 0.98130 0.91295 1.65290 1.00397 1.13855 1.42862 1.64008 0.96816 1.24345 1.39421 1.19063 0.93258 0.92800 0.84751 1.21445 0.91673 1.40565 1.04337 0.91561 1.25972 1.04609 0.94334 0.94519 1.70112 1.38026 1.40627 1.08455 0.85302 0.77941 0.78898 0.77614 1.19211 1.20669 1.18959 1.22607 0.96271 0.89859 1.00727 1.22097 0.92631 0.99660 0.91763 0.89958 0.90030 0.95625 0.95015 0.87712 0.91515 0.94281 0.85798 1.02247 0.98395 0.92480 0.93477 0.91322 0.95049 0.87814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.60 127.69 1.23 1.69 16 2 N -0.55 -13.71 4.97 -921.96 -4.58 -18.29 16 3 C 0.07 1.76 5.62 86.31 0.49 2.24 16 4 C 0.07 2.52 6.07 86.31 0.52 3.04 16 5 N -0.41 -16.34 4.83 -513.43 -2.48 -18.82 16 6 N -0.53 -24.53 6.74 -190.00 -1.28 -25.81 16 7 C 0.23 13.02 5.89 85.56 0.50 13.53 16 8 C -0.54 -31.60 9.32 25.60 0.24 -31.36 16 9 H 0.07 3.71 7.81 -2.91 -0.02 3.69 16 10 C 0.00 0.26 5.46 84.66 0.46 0.72 16 11 N -0.93 -57.47 13.29 21.45 0.28 -57.18 16 12 Si 0.98 44.55 29.54 68.60 2.03 46.58 16 13 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 16 C 0.03 1.13 5.58 86.31 0.48 1.61 16 17 C 0.07 1.79 5.62 86.31 0.49 2.27 16 18 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 19 H 0.08 1.22 8.13 -2.39 -0.02 1.20 16 20 H 0.03 0.46 8.14 -2.38 -0.02 0.44 16 21 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 22 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 23 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 24 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 25 H 0.33 14.32 8.13 -204.85 -1.67 12.66 16 26 H -0.04 -2.48 8.14 -2.39 -0.02 -2.50 16 27 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 28 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 29 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.10 2.17 8.13 -2.39 -0.02 2.15 16 Total: -1.00 -66.36 263.92 -2.21 -68.57 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -0.59 Total: 11.22 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 4.41 Total: -6.26 kcal Atomic # 7 Polarization: -112.05 SS G_CDS: -8.06 Total: -120.11 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -66.36 -2.21 -68.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041620089.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.683 kcal (2) G-P(sol) polarization free energy of solvation -66.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds