Wall clock time and date at job start Mon Mar 30 2020 01:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47254 * 2 1 4 4 C 1.50703 * 109.47228 * 119.99653 * 2 1 3 5 5 H 1.08003 * 119.99668 * 119.99819 * 4 2 1 6 6 C 1.37875 * 120.00310 * 299.99885 * 4 2 1 7 7 N 1.31518 * 119.99910 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00194 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46999 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46885 * 120.00287 * 8 6 4 11 11 H 1.48492 * 109.47395 * 240.00144 * 8 6 4 12 12 N 1.46898 * 109.47062 * 239.99890 * 2 1 3 13 13 C 1.46847 * 110.99897 * 306.04352 * 12 2 1 14 14 C 1.53034 * 109.51345 * 174.16738 * 13 12 2 15 15 C 1.53099 * 109.29509 * 59.18740 * 14 13 12 16 16 C 1.53126 * 109.15071 * 302.33888 * 15 14 13 17 17 H 1.08994 * 109.50076 * 297.71308 * 16 15 14 18 18 O 1.42897 * 109.50297 * 177.59256 * 16 15 14 19 19 C 1.46854 * 110.99958 * 181.83491 * 12 2 1 20 20 H 1.08998 * 109.47093 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47086 * 300.00296 * 1 2 3 22 22 H 1.08992 * 109.47359 * 59.99677 * 1 2 3 23 23 H 0.96993 * 120.00246 * 179.97438 * 7 6 4 24 24 H 1.09002 * 109.46481 * 294.17890 * 13 12 2 25 25 H 1.08994 * 109.46283 * 54.15743 * 13 12 2 26 26 H 1.09007 * 109.50453 * 179.12106 * 14 13 12 27 27 H 1.09009 * 109.50412 * 299.23146 * 14 13 12 28 28 H 1.08990 * 109.52931 * 182.43636 * 15 14 13 29 29 H 1.09002 * 109.57693 * 62.27167 * 15 14 13 30 30 H 0.96701 * 113.99785 * 60.19285 * 18 16 15 31 31 H 1.08993 * 109.46229 * 305.85774 * 19 12 2 32 32 H 1.09008 * 109.45822 * 65.82829 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3215 -1.1202 4.0080 9 1 3.1465 -2.2869 3.6038 10 1 3.1467 -0.1871 4.8165 11 1 1.1663 -1.5865 4.8162 12 7 2.0196 -0.6925 -1.1994 13 6 1.4345 -2.0350 -1.3076 14 6 1.8509 -2.6684 -2.6371 15 6 3.3783 -2.7507 -2.7018 16 6 3.9644 -1.3455 -2.5382 17 1 3.6307 -0.7139 -3.3614 18 8 5.3914 -1.4204 -2.5414 19 6 3.4870 -0.7502 -1.2116 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 0.7090 1.1616 3.4844 24 1 1.7898 -2.6536 -0.4835 25 1 0.3478 -1.9621 -1.2647 26 1 1.4293 -3.6710 -2.7104 27 1 1.4839 -2.0576 -3.4620 28 1 3.6805 -3.1614 -3.6651 29 1 3.7437 -3.3934 -1.9009 30 1 5.7640 -1.7892 -3.3539 31 1 3.8909 0.2557 -1.0986 32 1 3.8327 -1.3750 -0.3879 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042468272.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:17 Heat of formation + Delta-G solvation = -55.405601 kcal Electronic energy + Delta-G solvation = -13573.434424 eV Core-core repulsion = 11340.537888 eV Total energy + Delta-G solvation = -2232.896536 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.72563 -36.10858 -33.61290 -31.65180 -29.55391 -27.96522 -25.17210 -23.59364 -22.10077 -20.05248 -19.06378 -16.94815 -16.11352 -15.41323 -14.47731 -14.19283 -13.91735 -13.37052 -13.17227 -12.67000 -12.56487 -11.83280 -11.40847 -11.26772 -10.98748 -10.68354 -10.51001 -10.46897 -10.34261 -10.00611 -9.86903 -9.56403 -9.37859 -9.14619 -8.38315 -7.15063 -5.98074 -4.10857 3.27064 3.35505 3.39648 4.39429 4.43010 5.14825 5.18684 5.27881 5.36807 5.53872 5.74015 5.97365 6.06440 6.21193 6.27668 6.41028 6.50387 6.65310 6.77615 6.88404 6.96421 7.04946 7.17185 7.58293 7.72403 7.93359 7.97910 8.14853 8.35052 8.43976 8.98443 9.56874 11.02037 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.038771 B = 0.011399 C = 0.010241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.012512 B = 2455.686630 C = 2733.327344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.208 3.792 3 H 0.041 0.959 4 C -0.541 4.541 5 H 0.057 0.943 6 C 0.067 3.933 7 N -0.887 5.887 8 Si 0.888 3.112 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.534 5.534 13 C 0.054 3.946 14 C -0.115 4.115 15 C -0.148 4.148 16 C 0.104 3.896 17 H 0.056 0.944 18 O -0.570 6.570 19 C 0.074 3.926 20 H 0.029 0.971 21 H 0.085 0.915 22 H 0.015 0.985 23 H 0.260 0.740 24 H 0.036 0.964 25 H 0.074 0.926 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.370 0.630 31 H 0.069 0.931 32 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.598 -5.292 -8.967 10.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.102 3.898 3 H 0.058 0.942 4 C -0.580 4.580 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.526 5.526 8 Si 0.716 3.284 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.260 5.260 13 C -0.074 4.074 14 C -0.153 4.153 15 C -0.186 4.186 16 C 0.045 3.955 17 H 0.074 0.926 18 O -0.374 6.374 19 C -0.055 4.055 20 H 0.048 0.952 21 H 0.103 0.897 22 H 0.034 0.966 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.093 0.907 26 H 0.077 0.923 27 H 0.082 0.918 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.215 0.785 31 H 0.088 0.912 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.287 -4.631 -8.633 10.060 hybrid contribution 0.634 -1.225 1.114 1.773 sum 2.920 -5.856 -7.519 9.968 Atomic orbital electron populations 1.21860 0.97668 0.99204 1.00430 1.19279 0.92257 0.94175 0.84126 0.94154 1.21758 1.31682 1.12894 0.91715 0.92535 1.24906 0.94830 0.94849 0.98888 1.69887 1.36561 1.22769 1.23348 0.86608 0.78674 0.79812 0.83345 1.19929 1.20957 1.21006 1.62359 1.04603 1.16675 1.42386 1.21998 1.00003 0.90674 0.94723 1.21576 0.94424 0.99935 0.99344 1.22269 0.97195 0.98080 1.01087 1.21926 0.79167 0.94894 0.99503 0.92588 1.86516 1.20988 1.86761 1.43149 1.21630 0.89672 1.00637 0.93539 0.95232 0.89662 0.96561 0.92956 0.94595 0.90730 0.92290 0.91754 0.92741 0.91729 0.78462 0.91203 0.93679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 8.55 37.16 0.32 -2.92 16 2 C 0.21 5.27 2.45 -68.87 -0.17 5.10 16 3 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 4 C -0.54 -14.79 7.19 -34.44 -0.25 -15.04 16 5 H 0.06 1.57 5.84 -52.48 -0.31 1.27 16 6 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 7 N -0.89 -25.25 11.32 55.43 0.63 -24.62 16 8 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 9 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 12 N -0.53 -11.66 4.70 -228.08 -1.07 -12.73 16 13 C 0.05 1.07 4.76 -3.84 -0.02 1.05 16 14 C -0.11 -1.78 6.09 -26.66 -0.16 -1.95 16 15 C -0.15 -2.22 5.63 -26.62 -0.15 -2.37 16 16 C 0.10 1.75 3.63 -26.65 -0.10 1.65 16 17 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 18 O -0.57 -9.01 13.32 -35.23 -0.47 -9.48 16 19 C 0.07 1.55 4.66 -3.83 -0.02 1.53 16 20 H 0.03 0.68 6.20 -51.93 -0.32 0.36 16 21 H 0.08 2.26 6.07 -51.93 -0.32 1.95 16 22 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 24 H 0.04 0.77 7.03 -51.93 -0.37 0.41 16 25 H 0.07 1.47 5.87 -51.93 -0.30 1.16 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.37 3.87 9.08 45.56 0.41 4.29 16 31 H 0.07 1.53 8.12 -51.93 -0.42 1.11 16 32 H 0.04 1.05 6.57 -51.92 -0.34 0.71 16 LS Contribution 248.56 15.07 3.75 3.75 Total: -1.00 -29.14 248.56 -6.88 -36.02 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -4.06 Total: 1.76 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -0.64 Total: -11.17 kcal Atomic # 7 Polarization: -36.91 SS G_CDS: -0.44 Total: -37.35 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.47 Total: -9.48 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 3.75 Total: 3.75 kcal Total: -29.14 -6.88 -36.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042468272.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.383 kcal (2) G-P(sol) polarization free energy of solvation -29.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds