Wall clock time and date at job start Mon Mar 30 2020 01:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47254 * 2 1 4 4 C 1.50703 * 109.47228 * 119.99653 * 2 1 3 5 5 H 1.08003 * 119.99668 * 119.99819 * 4 2 1 6 6 C 1.37875 * 120.00310 * 299.99885 * 4 2 1 7 7 N 1.31518 * 119.99910 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00194 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46999 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46885 * 120.00287 * 8 6 4 11 11 H 1.48492 * 109.47395 * 240.00144 * 8 6 4 12 12 N 1.46898 * 109.47062 * 239.99890 * 2 1 3 13 13 C 1.46847 * 110.99897 * 306.04352 * 12 2 1 14 14 C 1.53034 * 109.51345 * 174.16738 * 13 12 2 15 15 C 1.53099 * 109.29509 * 59.18740 * 14 13 12 16 16 C 1.53126 * 109.15071 * 302.33888 * 15 14 13 17 17 H 1.08994 * 109.50076 * 297.71308 * 16 15 14 18 18 O 1.42897 * 109.50297 * 177.59256 * 16 15 14 19 19 C 1.46854 * 110.99958 * 181.83491 * 12 2 1 20 20 H 1.08998 * 109.47093 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47086 * 300.00296 * 1 2 3 22 22 H 1.08992 * 109.47359 * 59.99677 * 1 2 3 23 23 H 0.96993 * 120.00246 * 179.97438 * 7 6 4 24 24 H 1.09002 * 109.46481 * 294.17890 * 13 12 2 25 25 H 1.08994 * 109.46283 * 54.15743 * 13 12 2 26 26 H 1.09007 * 109.50453 * 179.12106 * 14 13 12 27 27 H 1.09009 * 109.50412 * 299.23146 * 14 13 12 28 28 H 1.08990 * 109.52931 * 182.43636 * 15 14 13 29 29 H 1.09002 * 109.57693 * 62.27167 * 15 14 13 30 30 H 0.96701 * 113.99785 * 60.19285 * 18 16 15 31 31 H 1.08993 * 109.46229 * 305.85774 * 19 12 2 32 32 H 1.09008 * 109.45822 * 65.82829 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9436 0.8303 2.6034 8 14 2.3215 -1.1202 4.0080 9 1 3.1465 -2.2869 3.6038 10 1 3.1467 -0.1871 4.8165 11 1 1.1663 -1.5865 4.8162 12 7 2.0196 -0.6925 -1.1994 13 6 1.4345 -2.0350 -1.3076 14 6 1.8509 -2.6684 -2.6371 15 6 3.3783 -2.7507 -2.7018 16 6 3.9644 -1.3455 -2.5382 17 1 3.6307 -0.7139 -3.3614 18 8 5.3914 -1.4204 -2.5414 19 6 3.4870 -0.7502 -1.2116 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 0.7090 1.1616 3.4844 24 1 1.7898 -2.6536 -0.4835 25 1 0.3478 -1.9621 -1.2647 26 1 1.4293 -3.6710 -2.7104 27 1 1.4839 -2.0576 -3.4620 28 1 3.6805 -3.1614 -3.6651 29 1 3.7437 -3.3934 -1.9009 30 1 5.7640 -1.7892 -3.3539 31 1 3.8909 0.2557 -1.0986 32 1 3.8327 -1.3750 -0.3879 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042468272.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:17 Heat of formation + Delta-G solvation = -77.655230 kcal Electronic energy + Delta-G solvation = -13574.399240 eV Core-core repulsion = 11340.537888 eV Total energy + Delta-G solvation = -2233.861352 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.26460 -37.61056 -35.34841 -33.44318 -31.19751 -29.64767 -27.27790 -25.21206 -23.57546 -21.76653 -20.71296 -18.43406 -18.00463 -17.13478 -16.26385 -15.76490 -15.30430 -15.17702 -14.81016 -14.28328 -14.09858 -13.41345 -13.23417 -13.03723 -12.79121 -12.52180 -12.31152 -12.18842 -11.96064 -11.79480 -11.57440 -11.17850 -11.08856 -10.67913 -10.50739 -9.02839 -8.08317 -6.30481 1.33300 1.35937 1.46194 2.37068 3.00353 3.12232 3.77083 3.88166 4.03217 4.16520 4.37286 4.56322 4.66041 4.78516 4.88334 4.98787 4.99888 5.05552 5.11508 5.15518 5.22568 5.23933 5.46072 5.51174 5.67833 5.96854 6.14103 6.32420 6.59356 6.88136 6.98186 7.40447 8.88368 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.038771 B = 0.011399 C = 0.010241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.012512 B = 2455.686630 C = 2733.327344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.208 3.792 3 H 0.004 0.996 4 C -0.551 4.551 5 H 0.045 0.955 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.948 3.052 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.275 1.275 12 N -0.530 5.530 13 C 0.053 3.947 14 C -0.107 4.107 15 C -0.142 4.142 16 C 0.114 3.886 17 H 0.070 0.930 18 O -0.586 6.586 19 C 0.073 3.927 20 H 0.036 0.964 21 H 0.060 0.940 22 H 0.033 0.967 23 H 0.263 0.737 24 H 0.010 0.990 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.077 0.923 28 H 0.096 0.904 29 H 0.050 0.950 30 H 0.396 0.604 31 H 0.047 0.953 32 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.843 -6.748 -10.367 12.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.101 3.899 3 H 0.022 0.978 4 C -0.590 4.590 5 H 0.063 0.937 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.774 3.226 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.201 1.201 12 N -0.255 5.255 13 C -0.076 4.076 14 C -0.144 4.144 15 C -0.180 4.180 16 C 0.055 3.945 17 H 0.088 0.912 18 O -0.394 6.394 19 C -0.055 4.055 20 H 0.055 0.945 21 H 0.079 0.921 22 H 0.052 0.948 23 H 0.073 0.927 24 H 0.028 0.972 25 H 0.091 0.909 26 H 0.104 0.896 27 H 0.096 0.904 28 H 0.115 0.885 29 H 0.069 0.931 30 H 0.246 0.754 31 H 0.066 0.934 32 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 2.542 -6.103 -10.062 12.040 hybrid contribution 0.597 -0.746 1.524 1.799 sum 3.140 -6.849 -8.538 11.387 Atomic orbital electron populations 1.21668 0.96719 0.99471 1.00012 1.19101 0.92982 0.92583 0.85242 0.97794 1.21914 1.31588 1.12624 0.92888 0.93673 1.25621 0.95098 0.95586 1.01590 1.69997 1.37254 1.23725 1.24070 0.85660 0.78297 0.78634 0.79975 1.20012 1.20555 1.20069 1.62314 1.05158 1.18009 1.40026 1.22098 0.99696 0.89063 0.96699 1.21547 0.95052 1.01161 0.96678 1.22235 0.96441 0.96453 1.02863 1.21690 0.79959 0.96159 0.96674 0.91214 1.86455 1.20317 1.87257 1.45353 1.21612 0.89141 0.99178 0.95612 0.94490 0.92111 0.94841 0.92745 0.97157 0.90915 0.89570 0.90389 0.88518 0.93101 0.75405 0.93412 0.96829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.55 71.98 0.62 -5.29 16 2 C 0.21 10.86 2.45 44.17 0.11 10.97 16 3 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 4 C -0.55 -30.95 7.19 25.60 0.18 -30.76 16 5 H 0.05 2.59 5.84 -2.91 -0.02 2.58 16 6 C 0.02 1.18 5.30 84.65 0.45 1.63 16 7 N -0.91 -52.85 11.32 21.45 0.24 -52.61 16 8 Si 0.95 44.66 29.54 68.60 2.03 46.68 16 9 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 10 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 N -0.53 -23.25 4.70 -875.50 -4.11 -27.36 16 13 C 0.05 2.02 4.76 86.32 0.41 2.43 16 14 C -0.11 -2.96 6.09 30.64 0.19 -2.77 16 15 C -0.14 -3.77 5.63 30.67 0.17 -3.59 16 16 C 0.11 3.60 3.63 30.65 0.11 3.71 16 17 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 18 O -0.59 -17.23 13.32 -148.98 -1.98 -19.22 16 19 C 0.07 3.13 4.66 86.32 0.40 3.53 16 20 H 0.04 1.71 6.20 -2.39 -0.01 1.69 16 21 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 22 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 24 H 0.01 0.44 7.03 -2.39 -0.02 0.42 16 25 H 0.07 2.78 5.87 -2.39 -0.01 2.77 16 26 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 27 H 0.08 2.01 8.14 -2.38 -0.02 1.99 16 28 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.40 6.90 9.08 -74.06 -0.67 6.23 16 31 H 0.05 2.18 8.12 -2.39 -0.02 2.16 16 32 H 0.01 0.65 6.57 -2.38 -0.02 0.63 16 Total: -1.00 -63.77 248.56 -0.76 -64.53 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: 0.43 Total: 8.13 kcal Atomic # 6 Polarization: -22.80 SS G_CDS: 2.64 Total: -20.16 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -3.87 Total: -79.97 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -1.98 Total: -19.22 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -63.77 -0.76 -64.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042468272.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.126 kcal (2) G-P(sol) polarization free energy of solvation -63.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds