Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47325 * 2 1 4 4 C 1.50703 * 109.47297 * 240.00086 * 2 1 3 5 5 H 1.07997 * 119.99838 * 271.07239 * 4 2 1 6 6 C 1.37876 * 119.99760 * 91.06287 * 4 2 1 7 7 N 1.31505 * 120.00274 * 352.67959 * 6 4 2 8 8 Si 1.86800 * 119.99514 * 172.67577 * 6 4 2 9 9 H 1.48495 * 109.47168 * 90.00629 * 8 6 4 10 10 H 1.48506 * 109.46718 * 210.00288 * 8 6 4 11 11 H 1.48495 * 109.47599 * 330.00031 * 8 6 4 12 12 N 1.46908 * 109.47432 * 120.00033 * 2 1 3 13 13 C 1.46840 * 111.00267 * 170.78742 * 12 2 1 14 14 C 1.53030 * 109.52547 * 185.83952 * 13 12 2 15 15 C 1.53119 * 109.28128 * 300.82527 * 14 13 12 16 16 O 1.42902 * 109.52605 * 177.55736 * 15 14 13 17 17 C 1.53120 * 109.16111 * 57.64758 * 15 14 13 18 18 C 1.46841 * 110.99795 * 295.00281 * 12 2 1 19 19 H 1.09006 * 109.47276 * 306.68388 * 1 2 3 20 20 H 1.08997 * 109.47382 * 66.68392 * 1 2 3 21 21 H 1.09003 * 109.47360 * 186.68776 * 1 2 3 22 22 H 0.97005 * 120.00544 * 354.52679 * 7 6 4 23 23 H 1.08999 * 109.46315 * 305.85885 * 13 12 2 24 24 H 1.09005 * 109.45980 * 65.82511 * 13 12 2 25 25 H 1.09000 * 109.50962 * 180.87588 * 14 13 12 26 26 H 1.09004 * 109.50239 * 60.76465 * 14 13 12 27 27 H 1.09002 * 109.51916 * 297.74505 * 15 14 13 28 28 H 0.96696 * 113.99806 * 60.31329 * 16 15 14 29 29 H 1.08993 * 109.50485 * 182.40565 * 17 15 14 30 30 H 1.09002 * 109.49809 * 62.29028 * 17 15 14 31 31 H 1.09001 * 109.46484 * 294.16937 * 18 12 2 32 32 H 1.08997 * 109.46524 * 54.13992 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1958 -1.7777 -1.2089 6 6 2.2830 0.0023 -2.3838 7 7 1.9495 1.2722 -2.4577 8 14 3.0964 -0.8362 -3.8415 9 1 2.0530 -1.4177 -4.7236 10 1 3.8913 0.1593 -4.6048 11 1 3.9917 -1.9164 -3.3550 12 7 2.0197 -0.6925 1.1995 13 6 3.4709 -0.9051 1.1288 14 6 3.9222 -1.7533 2.3199 15 6 3.5557 -1.0336 3.6208 16 8 3.9236 -1.8471 4.7366 17 6 2.0457 -0.7812 3.6473 18 6 1.6488 0.0388 2.4176 19 1 -0.3634 0.6140 0.8242 20 1 -0.3634 0.4067 -0.9437 21 1 -0.3634 -1.0207 0.1197 22 1 1.4565 1.6872 -1.7327 23 1 3.7175 -1.4214 0.2010 24 1 3.9807 0.0580 1.1548 25 1 5.0017 -1.8979 2.2756 26 1 3.4232 -2.7218 2.2868 27 1 4.0851 -0.0822 3.6722 28 1 4.8685 -2.0471 4.7829 29 1 1.7845 -0.2312 4.5513 30 1 1.5172 -1.7344 3.6351 31 1 2.1672 0.9975 2.4377 32 1 0.5721 0.2081 2.4260 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048209000.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = -63.019075 kcal Electronic energy + Delta-G solvation = -13457.403348 eV Core-core repulsion = 11224.176668 eV Total energy + Delta-G solvation = -2233.226681 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.79060 -36.34088 -33.65458 -31.24437 -30.44141 -28.17348 -24.96027 -23.11594 -22.27156 -20.30242 -19.29000 -17.10069 -16.73964 -15.55618 -14.23989 -14.14269 -13.82313 -13.74186 -13.45129 -12.99711 -12.20365 -11.75744 -11.51447 -11.26301 -11.16576 -10.96380 -10.75544 -10.67682 -10.22283 -10.16499 -10.10675 -9.83939 -9.47161 -8.61718 -8.30297 -7.26973 -6.38808 -4.09662 3.41829 3.44263 3.60354 4.38178 4.48792 4.82156 5.14847 5.18394 5.36204 5.45135 5.69658 5.84080 6.02680 6.03676 6.16141 6.22074 6.31704 6.49288 6.52047 6.66537 6.74757 6.75892 6.93919 7.10772 7.44848 7.76415 7.88081 8.04600 8.39951 8.57807 8.84859 9.62155 10.98075 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047742 B = 0.010183 C = 0.008879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.341158 B = 2748.957114 C = 3152.661412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.192 3.808 3 H 0.005 0.995 4 C -0.585 4.585 5 H 0.057 0.943 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 1.068 2.932 9 H -0.288 1.288 10 H -0.285 1.285 11 H -0.288 1.288 12 N -0.532 5.532 13 C 0.071 3.929 14 C -0.148 4.148 15 C 0.103 3.897 16 O -0.573 6.573 17 C -0.105 4.105 18 C 0.053 3.947 19 H 0.016 0.984 20 H 0.049 0.951 21 H 0.046 0.954 22 H 0.270 0.730 23 H 0.095 0.905 24 H 0.017 0.983 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.047 0.953 28 H 0.372 0.628 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.020 0.980 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.239 -3.326 8.890 10.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.086 3.914 3 H 0.022 0.978 4 C -0.623 4.623 5 H 0.075 0.925 6 C -0.185 4.185 7 N -0.548 5.548 8 Si 0.896 3.104 9 H -0.215 1.215 10 H -0.210 1.210 11 H -0.214 1.214 12 N -0.257 5.257 13 C -0.057 4.057 14 C -0.186 4.186 15 C 0.044 3.956 16 O -0.378 6.378 17 C -0.143 4.143 18 C -0.075 4.075 19 H 0.035 0.965 20 H 0.068 0.932 21 H 0.065 0.935 22 H 0.081 0.919 23 H 0.113 0.887 24 H 0.035 0.965 25 H 0.077 0.923 26 H 0.093 0.907 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.038 0.962 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 2.963 -3.459 7.491 8.767 hybrid contribution 0.334 0.557 1.366 1.512 sum 3.296 -2.902 8.857 9.886 Atomic orbital electron populations 1.21888 0.98470 0.99663 0.98634 1.19448 0.91560 0.92731 0.87666 0.97771 1.21861 1.48164 0.96114 0.96191 0.92481 1.25825 0.96284 0.95707 1.00683 1.70756 1.36773 1.11895 1.35359 0.83571 0.76473 0.75037 0.75315 1.21471 1.21029 1.21398 1.62058 1.12374 1.49211 1.02096 1.21813 0.88459 0.97431 0.97988 1.22365 0.99998 1.00932 0.95294 1.21933 0.96363 0.92179 0.85085 1.86491 1.29432 1.73198 1.48662 1.21523 0.93717 1.01454 0.97565 1.22033 1.00650 0.94257 0.90608 0.96471 0.93226 0.93521 0.91926 0.88700 0.96483 0.92313 0.90740 0.93522 0.78153 0.91957 0.90735 0.96175 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 8.83 37.15 0.33 -2.64 16 2 C 0.19 4.80 1.73 -68.86 -0.12 4.68 16 3 H 0.00 0.13 6.86 -51.93 -0.36 -0.23 16 4 C -0.58 -15.97 6.76 -34.44 -0.23 -16.20 16 5 H 0.06 1.59 7.48 -52.49 -0.39 1.20 16 6 C 0.02 0.54 5.45 -17.82 -0.10 0.45 16 7 N -0.91 -27.03 13.54 55.43 0.75 -26.28 16 8 Si 1.07 24.80 29.91 -169.99 -5.08 19.72 16 9 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.53 -11.60 4.52 -228.09 -1.03 -12.63 16 13 C 0.07 1.46 5.16 -3.84 -0.02 1.44 16 14 C -0.15 -2.42 5.72 -26.65 -0.15 -2.57 16 15 C 0.10 1.59 3.54 -26.61 -0.09 1.50 16 16 O -0.57 -8.13 13.32 -35.23 -0.47 -8.60 16 17 C -0.10 -1.71 5.75 -26.65 -0.15 -1.86 16 18 C 0.05 1.00 5.29 -3.84 -0.02 0.97 16 19 H 0.02 0.34 6.73 -51.93 -0.35 -0.01 16 20 H 0.05 1.21 8.00 -51.93 -0.42 0.79 16 21 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 22 H 0.27 7.99 6.67 -40.82 -0.27 7.71 16 23 H 0.09 2.13 6.40 -51.93 -0.33 1.80 16 24 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.37 3.59 9.09 45.56 0.41 4.01 16 29 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 1.37 6.32 -51.93 -0.33 1.04 16 LS Contribution 253.52 15.07 3.82 3.82 Total: -1.00 -29.98 253.52 -6.78 -36.77 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -4.21 Total: 1.45 kcal Atomic # 6 Polarization: -13.68 SS G_CDS: -0.56 Total: -14.24 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: -0.28 Total: -38.91 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.47 Total: -8.60 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.72 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.98 -6.78 -36.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048209000.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.254 kcal (2) G-P(sol) polarization free energy of solvation -29.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds