Wall clock time and date at job start Mon Mar 30 2020 01:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09001 * 109.47325 * 2 1 4 4 C 1.50703 * 109.47297 * 240.00086 * 2 1 3 5 5 H 1.07997 * 119.99838 * 271.07239 * 4 2 1 6 6 C 1.37876 * 119.99760 * 91.06287 * 4 2 1 7 7 N 1.31505 * 120.00274 * 352.67959 * 6 4 2 8 8 Si 1.86800 * 119.99514 * 172.67577 * 6 4 2 9 9 H 1.48495 * 109.47168 * 90.00629 * 8 6 4 10 10 H 1.48506 * 109.46718 * 210.00288 * 8 6 4 11 11 H 1.48495 * 109.47599 * 330.00031 * 8 6 4 12 12 N 1.46908 * 109.47432 * 120.00033 * 2 1 3 13 13 C 1.46840 * 111.00267 * 170.78742 * 12 2 1 14 14 C 1.53030 * 109.52547 * 185.83952 * 13 12 2 15 15 C 1.53119 * 109.28128 * 300.82527 * 14 13 12 16 16 O 1.42902 * 109.52605 * 177.55736 * 15 14 13 17 17 C 1.53120 * 109.16111 * 57.64758 * 15 14 13 18 18 C 1.46841 * 110.99795 * 295.00281 * 12 2 1 19 19 H 1.09006 * 109.47276 * 306.68388 * 1 2 3 20 20 H 1.08997 * 109.47382 * 66.68392 * 1 2 3 21 21 H 1.09003 * 109.47360 * 186.68776 * 1 2 3 22 22 H 0.97005 * 120.00544 * 354.52679 * 7 6 4 23 23 H 1.08999 * 109.46315 * 305.85885 * 13 12 2 24 24 H 1.09005 * 109.45980 * 65.82511 * 13 12 2 25 25 H 1.09000 * 109.50962 * 180.87588 * 14 13 12 26 26 H 1.09004 * 109.50239 * 60.76465 * 14 13 12 27 27 H 1.09002 * 109.51916 * 297.74505 * 15 14 13 28 28 H 0.96696 * 113.99806 * 60.31329 * 16 15 14 29 29 H 1.08993 * 109.50485 * 182.40565 * 17 15 14 30 30 H 1.09002 * 109.49809 * 62.29028 * 17 15 14 31 31 H 1.09001 * 109.46484 * 294.16937 * 18 12 2 32 32 H 1.08997 * 109.46524 * 54.13992 * 18 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1958 -1.7777 -1.2089 6 6 2.2830 0.0023 -2.3838 7 7 1.9495 1.2722 -2.4577 8 14 3.0964 -0.8362 -3.8415 9 1 2.0530 -1.4177 -4.7236 10 1 3.8913 0.1593 -4.6048 11 1 3.9917 -1.9164 -3.3550 12 7 2.0197 -0.6925 1.1995 13 6 3.4709 -0.9051 1.1288 14 6 3.9222 -1.7533 2.3199 15 6 3.5557 -1.0336 3.6208 16 8 3.9236 -1.8471 4.7366 17 6 2.0457 -0.7812 3.6473 18 6 1.6488 0.0388 2.4176 19 1 -0.3634 0.6140 0.8242 20 1 -0.3634 0.4067 -0.9437 21 1 -0.3634 -1.0207 0.1197 22 1 1.4565 1.6872 -1.7327 23 1 3.7175 -1.4214 0.2010 24 1 3.9807 0.0580 1.1548 25 1 5.0017 -1.8979 2.2756 26 1 3.4232 -2.7218 2.2868 27 1 4.0851 -0.0822 3.6722 28 1 4.8685 -2.0471 4.7829 29 1 1.7845 -0.2312 4.5513 30 1 1.5172 -1.7344 3.6351 31 1 2.1672 0.9975 2.4377 32 1 0.5721 0.2081 2.4260 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048209000.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:10 Heat of formation + Delta-G solvation = -85.541955 kcal Electronic energy + Delta-G solvation = -13458.380014 eV Core-core repulsion = 11224.176668 eV Total energy + Delta-G solvation = -2234.203346 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.28105 -37.78292 -35.45979 -33.01109 -31.92002 -29.88955 -26.99597 -24.69894 -23.79969 -22.12466 -20.76871 -18.80389 -18.24630 -17.22692 -15.88699 -15.64976 -15.46063 -15.41384 -15.04149 -14.61631 -13.66247 -13.39946 -13.25369 -13.05558 -12.85999 -12.63852 -12.55760 -12.17233 -12.04002 -11.92835 -11.67625 -11.30960 -10.79203 -10.68499 -10.36062 -9.06973 -8.60743 -6.31904 1.53127 1.60559 1.78649 2.55793 3.06377 3.23592 3.34330 3.82591 3.86021 4.18389 4.25409 4.36437 4.48665 4.56455 4.65595 4.73762 4.78897 4.88829 4.93787 4.99340 5.07797 5.14058 5.23956 5.34833 5.52712 5.94366 6.02854 6.46353 6.49295 6.74831 6.87274 7.47359 8.76030 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047742 B = 0.010183 C = 0.008879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.341158 B = 2748.957114 C = 3152.661412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.192 3.808 3 H -0.028 1.028 4 C -0.587 4.587 5 H 0.048 0.952 6 C -0.030 4.030 7 N -0.938 5.938 8 Si 1.112 2.888 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.538 5.538 13 C 0.071 3.929 14 C -0.136 4.136 15 C 0.110 3.890 16 O -0.577 6.577 17 C -0.100 4.100 18 C 0.053 3.947 19 H 0.041 0.959 20 H 0.029 0.971 21 H 0.049 0.951 22 H 0.257 0.743 23 H 0.068 0.932 24 H 0.005 0.995 25 H 0.086 0.914 26 H 0.067 0.933 27 H 0.055 0.945 28 H 0.394 0.606 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.016 0.984 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.914 -4.351 10.064 11.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.084 3.916 3 H -0.010 1.010 4 C -0.626 4.626 5 H 0.067 0.933 6 C -0.228 4.228 7 N -0.576 5.576 8 Si 0.935 3.065 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.195 1.195 12 N -0.263 5.263 13 C -0.057 4.057 14 C -0.174 4.174 15 C 0.051 3.949 16 O -0.385 6.385 17 C -0.138 4.138 18 C -0.075 4.075 19 H 0.060 0.940 20 H 0.048 0.952 21 H 0.068 0.932 22 H 0.067 0.933 23 H 0.086 0.914 24 H 0.023 0.977 25 H 0.105 0.895 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.244 0.756 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.034 0.966 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.648 -4.504 8.701 10.454 hybrid contribution 0.132 0.864 1.087 1.395 sum 3.779 -3.639 9.788 11.105 Atomic orbital electron populations 1.21716 0.97134 1.00137 0.98573 1.19336 0.92616 0.90950 0.88651 1.01047 1.22079 1.47548 0.95738 0.97203 0.93342 1.27177 0.96470 0.95615 1.03533 1.70876 1.38419 1.12998 1.35276 0.82993 0.76236 0.74625 0.72671 1.20142 1.21058 1.19526 1.62029 1.13232 1.49053 1.02024 1.21794 0.87694 0.97277 0.98943 1.22274 1.01600 0.99574 0.93983 1.21741 0.95752 0.92560 0.84840 1.86450 1.31683 1.72856 1.47546 1.21462 0.94571 1.00895 0.96876 1.22100 1.00880 0.94310 0.90237 0.93983 0.95236 0.93202 0.93259 0.91351 0.97663 0.89510 0.91436 0.92736 0.75640 0.89800 0.91351 0.96568 0.90346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.45 8.83 71.98 0.64 -4.81 16 2 C 0.19 9.73 1.73 44.17 0.08 9.81 16 3 H -0.03 -1.59 6.86 -2.39 -0.02 -1.61 16 4 C -0.59 -32.55 6.76 25.60 0.17 -32.38 16 5 H 0.05 2.72 7.48 -2.91 -0.02 2.70 16 6 C -0.03 -1.68 5.45 84.66 0.46 -1.21 16 7 N -0.94 -56.85 13.54 21.45 0.29 -56.56 16 8 Si 1.11 49.92 29.91 68.60 2.05 51.97 16 9 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 12 N -0.54 -23.32 4.52 -875.54 -3.95 -27.28 16 13 C 0.07 2.89 5.16 86.32 0.45 3.33 16 14 C -0.14 -4.17 5.72 30.64 0.18 -3.99 16 15 C 0.11 3.07 3.54 30.67 0.11 3.18 16 16 O -0.58 -14.21 13.32 -148.98 -1.99 -16.20 16 17 C -0.10 -3.02 5.75 30.65 0.18 -2.84 16 18 C 0.05 1.91 5.29 86.33 0.46 2.37 16 19 H 0.04 1.70 6.73 -2.38 -0.02 1.68 16 20 H 0.03 1.44 8.00 -2.39 -0.02 1.42 16 21 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 22 H 0.26 15.79 6.67 -92.70 -0.62 15.17 16 23 H 0.07 3.10 6.40 -2.39 -0.02 3.08 16 24 H 0.01 0.22 8.14 -2.38 -0.02 0.20 16 25 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 26 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 27 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.39 5.99 9.09 -74.06 -0.67 5.32 16 29 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 2.75 6.32 -2.39 -0.02 2.73 16 Total: -1.00 -64.33 253.52 -0.32 -64.65 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: 0.57 Total: 9.96 kcal Atomic # 6 Polarization: -29.26 SS G_CDS: 2.71 Total: -26.55 kcal Atomic # 7 Polarization: -80.17 SS G_CDS: -3.66 Total: -83.83 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -1.99 Total: -16.20 kcal Atomic # 14 Polarization: 49.92 SS G_CDS: 2.05 Total: 51.97 kcal Total: -64.33 -0.32 -64.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048209000.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.888 kcal (2) G-P(sol) polarization free energy of solvation -64.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds