Wall clock time and date at job start Mon Mar 30 2020 02:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00037 * 2 1 4 4 H 1.09009 * 110.05565 * 28.58119 * 3 2 1 5 5 C 1.54266 * 110.02991 * 267.16966 * 3 2 1 6 6 C 1.54899 * 104.19319 * 217.10076 * 5 3 2 7 7 C 1.54891 * 102.74611 * 37.94376 * 6 5 3 8 8 C 1.53869 * 110.03622 * 149.99938 * 3 2 1 9 9 H 1.09001 * 110.03290 * 238.57432 * 8 3 2 10 10 N 1.46906 * 110.03214 * 359.97438 * 8 3 2 11 11 C 1.46895 * 111.00215 * 203.61925 * 10 8 3 12 12 C 1.50702 * 109.47029 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99927 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99918 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00058 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99914 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47360 * 90.00527 * 16 14 12 18 18 H 1.48504 * 109.46906 * 210.00240 * 16 14 12 19 19 H 1.48497 * 109.47192 * 329.99990 * 16 14 12 20 20 H 1.09004 * 109.46684 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47079 * 299.99743 * 1 2 3 22 22 H 1.08993 * 109.47019 * 60.00235 * 1 2 3 23 23 H 1.08998 * 110.48811 * 98.43060 * 5 3 2 24 24 H 1.08991 * 110.48773 * 335.77639 * 5 3 2 25 25 H 1.08997 * 110.75810 * 279.62763 * 6 5 3 26 26 H 1.08994 * 110.75501 * 156.25337 * 6 5 3 27 27 H 1.09000 * 110.48374 * 203.37774 * 7 6 5 28 28 H 1.08997 * 110.60279 * 80.78868 * 7 6 5 29 29 H 1.00905 * 110.99283 * 79.66631 * 10 8 3 30 30 H 1.08999 * 109.47223 * 300.00509 * 11 10 8 31 31 H 1.08998 * 109.47297 * 60.00595 * 11 10 8 32 32 H 0.96993 * 120.00227 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3409 2.0127 0.4899 5 6 2.2906 1.7590 -1.4476 6 6 3.6253 2.5389 -1.3495 7 6 4.4266 1.7156 -0.3107 8 6 3.3683 1.2778 0.7228 9 1 3.3580 1.9715 1.5635 10 7 3.6589 -0.0822 1.1962 11 6 4.6019 -0.0575 2.3222 12 6 4.8757 -1.4672 2.7791 13 1 4.3974 -2.2984 2.2824 14 6 5.7369 -1.6958 3.8313 15 7 5.9755 -2.9261 4.2304 16 14 6.5647 -0.2582 4.6900 17 1 5.7114 0.2053 5.8136 18 1 7.8847 -0.6895 5.2162 19 1 6.7562 0.8523 3.7230 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.4932 2.4110 -1.8042 24 1 2.4007 0.8955 -2.1034 25 1 3.4544 3.5534 -0.9896 26 1 4.1375 2.5503 -2.3115 27 1 5.1881 2.3358 0.1622 28 1 4.8833 0.8449 -0.7813 29 1 4.0071 -0.6595 0.4454 30 1 5.5346 0.4089 2.0049 31 1 4.1712 0.5140 3.1444 32 1 6.5816 -3.0870 4.9704 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050373464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:51 Heat of formation + Delta-G solvation = -48.586267 kcal Electronic energy + Delta-G solvation = -13118.967204 eV Core-core repulsion = 10886.366377 eV Total energy + Delta-G solvation = -2232.600827 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.93017 -35.96013 -33.91658 -32.00886 -28.22968 -27.95091 -25.92883 -24.99192 -21.17993 -20.68473 -19.64489 -16.83069 -16.41059 -15.69478 -14.85194 -14.35561 -14.12641 -13.74541 -13.49763 -13.05137 -12.58583 -12.27853 -11.90765 -11.50929 -11.17565 -11.12573 -10.93481 -10.61579 -10.53905 -10.39231 -10.25744 -9.73014 -9.25410 -9.06549 -8.52821 -7.20937 -5.99385 -3.96221 3.32278 3.38984 3.41586 4.15684 4.47177 4.76323 4.78421 5.06544 5.31899 5.33553 5.41710 5.55685 5.59369 5.71559 5.74147 5.79215 5.89152 5.95451 6.09586 6.11691 6.22962 6.37600 6.50094 6.85623 7.12468 7.59143 7.72512 8.06707 8.52020 8.75882 9.11037 9.63181 11.14188 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042599 B = 0.009213 C = 0.008094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.136698 B = 3038.451254 C = 3458.726308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.348 6.348 3 C 0.093 3.907 4 H 0.056 0.944 5 C -0.148 4.148 6 C -0.120 4.120 7 C -0.154 4.154 8 C 0.082 3.918 9 H 0.076 0.924 10 N -0.655 5.655 11 C 0.163 3.837 12 C -0.511 4.511 13 H 0.080 0.920 14 C 0.066 3.934 15 N -0.902 5.902 16 Si 0.877 3.123 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.268 1.268 20 H 0.081 0.919 21 H 0.035 0.965 22 H 0.029 0.971 23 H 0.060 0.940 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.339 0.661 30 H -0.018 1.018 31 H 0.018 0.982 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.089 11.284 -9.887 16.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.033 3.967 4 H 0.075 0.925 5 C -0.186 4.186 6 C -0.158 4.158 7 C -0.193 4.193 8 C -0.030 4.030 9 H 0.095 0.905 10 N -0.284 5.284 11 C 0.035 3.965 12 C -0.549 4.549 13 H 0.098 0.902 14 C -0.135 4.135 15 N -0.542 5.542 16 Si 0.705 3.295 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.193 1.193 20 H 0.099 0.901 21 H 0.054 0.946 22 H 0.047 0.953 23 H 0.078 0.922 24 H 0.094 0.906 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.158 0.842 30 H -0.001 1.001 31 H 0.036 0.964 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.433 10.948 -9.320 16.186 hybrid contribution 1.101 1.198 0.138 1.633 sum -6.332 12.146 -9.181 16.490 Atomic orbital electron populations 1.22715 0.82882 1.02231 0.98749 1.88151 1.17644 1.26160 1.94529 1.22839 0.94849 0.84985 0.93993 0.92542 1.22924 0.97377 1.00190 0.98079 1.22342 0.95836 0.98455 0.99136 1.23176 0.98498 1.00280 0.97353 1.22318 0.91943 0.93357 0.95358 0.90536 1.60302 1.49548 1.07148 1.11440 1.20037 0.88857 0.98041 0.89541 1.21099 1.25875 0.91720 1.16212 0.90237 1.24915 0.96347 0.95454 0.96755 1.69906 1.36950 1.19317 1.28009 0.86828 0.79106 0.83365 0.80223 1.20257 1.21300 1.19302 0.90057 0.94618 0.95288 0.92154 0.90578 0.91726 0.91756 0.91824 0.91103 0.84193 1.00067 0.96354 0.92764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.85 101.05 1.10 1.51 16 2 O -0.35 -5.97 9.31 -35.23 -0.33 -6.30 16 3 C 0.09 1.41 3.38 -25.62 -0.09 1.32 16 4 H 0.06 0.78 7.81 -51.92 -0.41 0.38 16 5 C -0.15 -1.85 6.56 -25.07 -0.16 -2.01 16 6 C -0.12 -1.44 6.91 -24.73 -0.17 -1.61 16 7 C -0.15 -2.31 6.40 -25.07 -0.16 -2.47 16 8 C 0.08 1.44 3.22 -66.59 -0.21 1.22 16 9 H 0.08 1.34 7.83 -51.93 -0.41 0.94 16 10 N -0.65 -14.33 5.26 -106.81 -0.56 -14.89 16 11 C 0.16 4.10 4.33 -4.98 -0.02 4.08 16 12 C -0.51 -15.11 9.87 -34.44 -0.34 -15.45 16 13 H 0.08 2.56 8.06 -52.49 -0.42 2.14 16 14 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 15 N -0.90 -28.40 13.96 55.43 0.77 -27.63 16 16 Si 0.88 22.09 27.47 -169.99 -4.67 17.43 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 19 H -0.27 -6.50 6.54 56.52 0.37 -6.13 16 20 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 21 H 0.04 0.45 8.10 -51.93 -0.42 0.03 16 22 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 1.00 8.08 -51.93 -0.42 0.58 16 25 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.07 1.12 7.58 -51.93 -0.39 0.73 16 29 H 0.34 7.44 8.13 -39.29 -0.32 7.12 16 30 H -0.02 -0.46 7.16 -51.93 -0.37 -0.83 16 31 H 0.02 0.47 7.50 -51.93 -0.39 0.08 16 32 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 261.14 15.07 3.94 3.94 Total: -1.00 -31.75 261.14 -6.26 -38.01 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -5.25 Total: 0.98 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: -0.16 Total: -11.53 kcal Atomic # 7 Polarization: -42.73 SS G_CDS: 0.21 Total: -42.52 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.33 Total: -6.30 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.75 -6.26 -38.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050373464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.579 kcal (2) G-P(sol) polarization free energy of solvation -31.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds