Wall clock time and date at job start Mon Mar 30 2020 02:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42897 * 114.00037 * 2 1 4 4 H 1.09009 * 110.05565 * 28.58119 * 3 2 1 5 5 C 1.54266 * 110.02991 * 267.16966 * 3 2 1 6 6 C 1.54899 * 104.19319 * 217.10076 * 5 3 2 7 7 C 1.54891 * 102.74611 * 37.94376 * 6 5 3 8 8 C 1.53869 * 110.03622 * 149.99938 * 3 2 1 9 9 H 1.09001 * 110.03290 * 238.57432 * 8 3 2 10 10 N 1.46906 * 110.03214 * 359.97438 * 8 3 2 11 11 C 1.46895 * 111.00215 * 203.61925 * 10 8 3 12 12 C 1.50702 * 109.47029 * 180.02562 * 11 10 8 13 13 H 1.08000 * 119.99927 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99918 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00058 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 119.99914 * 359.97438 * 14 12 11 17 17 H 1.48499 * 109.47360 * 90.00527 * 16 14 12 18 18 H 1.48504 * 109.46906 * 210.00240 * 16 14 12 19 19 H 1.48497 * 109.47192 * 329.99990 * 16 14 12 20 20 H 1.09004 * 109.46684 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47079 * 299.99743 * 1 2 3 22 22 H 1.08993 * 109.47019 * 60.00235 * 1 2 3 23 23 H 1.08998 * 110.48811 * 98.43060 * 5 3 2 24 24 H 1.08991 * 110.48773 * 335.77639 * 5 3 2 25 25 H 1.08997 * 110.75810 * 279.62763 * 6 5 3 26 26 H 1.08994 * 110.75501 * 156.25337 * 6 5 3 27 27 H 1.09000 * 110.48374 * 203.37774 * 7 6 5 28 28 H 1.08997 * 110.60279 * 80.78868 * 7 6 5 29 29 H 1.00905 * 110.99283 * 79.66631 * 10 8 3 30 30 H 1.08999 * 109.47223 * 300.00509 * 11 10 8 31 31 H 1.08998 * 109.47297 * 60.00595 * 11 10 8 32 32 H 0.96993 * 120.00227 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3409 2.0127 0.4899 5 6 2.2906 1.7590 -1.4476 6 6 3.6253 2.5389 -1.3495 7 6 4.4266 1.7156 -0.3107 8 6 3.3683 1.2778 0.7228 9 1 3.3580 1.9715 1.5635 10 7 3.6589 -0.0822 1.1962 11 6 4.6019 -0.0575 2.3222 12 6 4.8757 -1.4672 2.7791 13 1 4.3974 -2.2984 2.2824 14 6 5.7369 -1.6958 3.8313 15 7 5.9755 -2.9261 4.2304 16 14 6.5647 -0.2582 4.6900 17 1 5.7114 0.2053 5.8136 18 1 7.8847 -0.6895 5.2162 19 1 6.7562 0.8523 3.7230 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.4932 2.4110 -1.8042 24 1 2.4007 0.8955 -2.1034 25 1 3.4544 3.5534 -0.9896 26 1 4.1375 2.5503 -2.3115 27 1 5.1881 2.3358 0.1622 28 1 4.8833 0.8449 -0.7813 29 1 4.0071 -0.6595 0.4454 30 1 5.5346 0.4089 2.0049 31 1 4.1712 0.5140 3.1444 32 1 6.5816 -3.0870 4.9704 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050373464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:50 Heat of formation + Delta-G solvation = -71.618040 kcal Electronic energy + Delta-G solvation = -13119.965937 eV Core-core repulsion = 10886.366377 eV Total energy + Delta-G solvation = -2233.599560 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.15356 -37.28652 -35.63912 -34.05266 -29.95699 -29.07085 -27.24963 -26.43322 -23.22954 -21.74395 -20.94633 -18.94783 -17.64348 -17.16230 -16.28473 -15.88398 -15.44115 -15.33922 -14.89446 -14.52396 -14.38356 -13.70026 -13.54814 -12.89474 -12.87699 -12.39357 -12.19598 -11.99016 -11.94923 -11.77608 -11.65545 -11.56352 -11.28980 -10.80905 -10.26248 -8.91037 -8.29709 -6.33900 1.33557 1.35767 1.47011 2.33986 3.00117 3.03932 3.57162 3.68224 3.79667 4.16767 4.33042 4.47452 4.50753 4.57026 4.64711 4.72236 4.81163 4.83789 4.93788 5.01759 5.04364 5.12533 5.18131 5.26122 5.40914 5.53888 5.99206 6.50083 6.63364 6.73946 6.86539 7.31073 8.87477 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042599 B = 0.009213 C = 0.008094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.136698 B = 3038.451254 C = 3458.726308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.385 6.385 3 C 0.090 3.910 4 H 0.072 0.928 5 C -0.139 4.139 6 C -0.109 4.109 7 C -0.153 4.153 8 C 0.071 3.929 9 H 0.075 0.925 10 N -0.667 5.667 11 C 0.177 3.823 12 C -0.527 4.527 13 H 0.033 0.967 14 C 0.005 3.995 15 N -0.949 5.949 16 Si 0.954 3.046 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.250 1.250 20 H 0.082 0.918 21 H 0.039 0.961 22 H 0.054 0.946 23 H 0.087 0.913 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.056 0.944 29 H 0.334 0.666 30 H -0.014 1.014 31 H 0.019 0.981 32 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.271 14.097 -10.491 19.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.304 6.304 3 C 0.031 3.969 4 H 0.090 0.910 5 C -0.177 4.177 6 C -0.147 4.147 7 C -0.192 4.192 8 C -0.040 4.040 9 H 0.093 0.907 10 N -0.296 5.296 11 C 0.049 3.951 12 C -0.565 4.565 13 H 0.051 0.949 14 C -0.192 4.192 15 N -0.590 5.590 16 Si 0.777 3.223 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.174 1.174 20 H 0.101 0.899 21 H 0.057 0.943 22 H 0.072 0.928 23 H 0.106 0.894 24 H 0.085 0.915 25 H 0.102 0.898 26 H 0.099 0.901 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.152 0.848 30 H 0.003 0.997 31 H 0.037 0.963 32 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -7.639 13.779 -9.948 18.632 hybrid contribution 1.079 0.229 0.290 1.141 sum -6.560 14.008 -9.658 18.235 Atomic orbital electron populations 1.22863 0.81073 1.02879 1.00124 1.88093 1.19827 1.27578 1.94865 1.22939 0.93558 0.84744 0.95644 0.91010 1.22867 0.98583 1.00337 0.95930 1.22331 0.94827 0.98630 0.98867 1.23097 0.98169 1.00343 0.97596 1.22547 0.94401 0.90659 0.96343 0.90714 1.60206 1.48357 1.10181 1.10886 1.19754 0.89724 0.94916 0.90740 1.21365 1.25856 0.92859 1.16405 0.94908 1.25930 0.96980 0.98795 0.97499 1.70065 1.37969 1.22062 1.28898 0.85612 0.77984 0.79486 0.79195 1.19089 1.20464 1.17356 0.89946 0.94256 0.92755 0.89409 0.91534 0.89781 0.90106 0.91626 0.92505 0.84775 0.99672 0.96284 0.92369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 10.85 113.37 1.23 1.91 16 2 O -0.39 -12.95 9.31 -148.98 -1.39 -14.34 16 3 C 0.09 2.55 3.38 31.32 0.11 2.66 16 4 H 0.07 1.79 7.81 -2.38 -0.02 1.77 16 5 C -0.14 -3.06 6.56 31.67 0.21 -2.85 16 6 C -0.11 -2.23 6.91 31.89 0.22 -2.01 16 7 C -0.15 -4.33 6.40 31.67 0.20 -4.12 16 8 C 0.07 2.41 3.22 45.64 0.15 2.56 16 9 H 0.07 2.51 7.83 -2.39 -0.02 2.49 16 10 N -0.67 -29.47 5.26 -491.84 -2.59 -32.06 16 11 C 0.18 8.92 4.33 85.56 0.37 9.29 16 12 C -0.53 -32.11 9.87 25.60 0.25 -31.85 16 13 H 0.03 2.23 8.06 -2.91 -0.02 2.21 16 14 C 0.01 0.30 5.47 84.65 0.46 0.77 16 15 N -0.95 -61.21 13.96 21.45 0.30 -60.91 16 16 Si 0.95 45.35 27.47 68.60 1.88 47.24 16 17 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 18 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 19 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 20 H 0.08 1.97 8.14 -2.39 -0.02 1.96 16 21 H 0.04 0.93 8.10 -2.39 -0.02 0.91 16 22 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 23 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 25 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.06 1.76 7.58 -2.39 -0.02 1.74 16 29 H 0.33 15.11 8.13 -89.69 -0.73 14.38 16 30 H -0.01 -0.70 7.16 -2.39 -0.02 -0.72 16 31 H 0.02 0.96 7.50 -2.39 -0.02 0.94 16 32 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 Total: -1.00 -69.81 261.14 1.70 -68.11 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.30 Total: 15.61 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 3.20 Total: -23.65 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -2.29 Total: -92.96 kcal Atomic # 8 Polarization: -12.95 SS G_CDS: -1.39 Total: -14.34 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 1.88 Total: 47.24 kcal Total: -69.81 1.70 -68.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050373464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.510 kcal (2) G-P(sol) polarization free energy of solvation -69.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds