Wall clock time and date at job start Mon Mar 30 2020 02:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00034 * 2 1 4 4 H 1.09002 * 110.01681 * 330.69932 * 3 2 1 5 5 C 1.54266 * 110.07332 * 92.11745 * 3 2 1 6 6 C 1.54885 * 104.19741 * 142.91793 * 5 3 2 7 7 C 1.54888 * 102.74932 * 322.05670 * 6 5 3 8 8 C 1.53873 * 110.03411 * 209.30898 * 3 2 1 9 9 H 1.08996 * 110.03511 * 121.37977 * 8 3 2 10 10 N 1.46902 * 110.03028 * 359.95043 * 8 3 2 11 11 C 1.46903 * 110.99710 * 155.00128 * 10 8 3 12 12 C 1.50702 * 109.47160 * 180.02562 * 11 10 8 13 13 H 1.08007 * 119.99727 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00459 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00392 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99737 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47163 * 90.00129 * 16 14 12 18 18 H 1.48505 * 109.47193 * 209.99871 * 16 14 12 19 19 H 1.48500 * 109.47075 * 330.00062 * 16 14 12 20 20 H 1.09004 * 109.46772 * 60.00593 * 1 2 3 21 21 H 1.09000 * 109.46667 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47296 * 300.00134 * 1 2 3 23 23 H 1.08997 * 110.48660 * 261.59861 * 5 3 2 24 24 H 1.09009 * 110.48346 * 24.23668 * 5 3 2 25 25 H 1.09003 * 110.75826 * 203.74253 * 6 5 3 26 26 H 1.08995 * 110.75781 * 80.37118 * 6 5 3 27 27 H 1.08998 * 110.48749 * 279.26537 * 7 6 5 28 28 H 1.09000 * 110.60155 * 156.67434 * 7 6 5 29 29 H 1.00899 * 111.00073 * 31.04679 * 10 8 3 30 30 H 1.08996 * 109.47355 * 299.99838 * 11 10 8 31 31 H 1.08996 * 109.47390 * 60.00091 * 11 10 8 32 32 H 0.97003 * 120.00240 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3461 2.0096 -0.5012 5 6 2.2745 1.7674 1.4480 6 6 3.6099 2.5472 1.3602 7 6 4.4229 1.7183 0.3350 8 6 3.3762 1.2743 -0.7077 9 1 3.3750 1.9632 -1.5523 10 7 3.6727 -0.0884 -1.1695 11 6 4.6027 -0.0682 -2.3064 12 6 4.8822 -1.4804 -2.7520 13 1 4.4158 -2.3101 -2.2413 14 6 5.7330 -1.7135 -3.8115 15 7 5.9773 -2.9460 -4.2000 16 14 6.5391 -0.2786 -4.6952 17 1 7.8362 0.0376 -4.0451 18 1 6.7729 -0.6407 -6.1163 19 1 5.6488 0.9080 -4.6268 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.4730 2.4210 1.7922 24 1 2.3776 0.9074 2.1099 25 1 4.1115 2.5643 2.3278 26 1 3.4426 3.5595 0.9926 27 1 4.8730 0.8506 0.8172 28 1 5.1906 2.3342 -0.1335 29 1 2.8252 -0.5830 -1.4043 30 1 4.1581 0.4908 -3.1297 31 1 5.5350 0.4092 -2.0048 32 1 6.5762 -3.1100 -4.9452 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050373467.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:54 Heat of formation + Delta-G solvation = -49.828932 kcal Electronic energy + Delta-G solvation = -13123.757324 eV Core-core repulsion = 10891.102611 eV Total energy + Delta-G solvation = -2232.654713 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.03699 -35.93976 -34.00111 -32.02038 -28.29414 -27.93583 -26.07088 -25.03956 -21.28300 -20.52463 -19.47642 -16.86227 -16.51071 -15.63590 -15.07614 -14.59745 -14.15629 -13.93630 -13.53638 -13.12282 -12.39202 -12.31135 -11.88277 -11.39514 -11.27465 -10.91445 -10.83569 -10.79873 -10.50841 -10.30877 -10.18902 -9.73501 -9.39625 -9.12926 -8.52345 -7.28324 -5.99033 -3.95887 3.32729 3.39282 3.42292 3.92009 4.47660 4.75306 4.82694 5.06901 5.30964 5.33809 5.36841 5.43661 5.47136 5.71662 5.74912 5.81570 5.83154 6.02097 6.14148 6.19264 6.31085 6.43881 6.70934 6.90649 7.12476 7.38348 7.72816 8.06680 8.60789 8.76873 9.11191 9.63676 11.14492 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042587 B = 0.009212 C = 0.008093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.314579 B = 3038.725775 C = 3458.850184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.364 6.364 3 C 0.082 3.918 4 H 0.057 0.943 5 C -0.140 4.140 6 C -0.122 4.122 7 C -0.113 4.113 8 C 0.081 3.919 9 H 0.041 0.959 10 N -0.663 5.663 11 C 0.163 3.837 12 C -0.511 4.511 13 H 0.079 0.921 14 C 0.067 3.933 15 N -0.902 5.902 16 Si 0.877 3.123 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.269 1.269 20 H 0.037 0.963 21 H 0.085 0.915 22 H 0.035 0.965 23 H 0.059 0.941 24 H 0.079 0.921 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.082 0.918 28 H 0.059 0.941 29 H 0.347 0.653 30 H -0.020 1.020 31 H 0.020 0.980 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.631 11.369 8.866 16.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.023 3.977 4 H 0.075 0.925 5 C -0.178 4.178 6 C -0.160 4.160 7 C -0.152 4.152 8 C -0.031 4.031 9 H 0.059 0.941 10 N -0.298 5.298 11 C 0.035 3.965 12 C -0.549 4.549 13 H 0.098 0.902 14 C -0.135 4.135 15 N -0.542 5.542 16 Si 0.705 3.295 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.194 1.194 20 H 0.055 0.945 21 H 0.103 0.897 22 H 0.054 0.946 23 H 0.077 0.923 24 H 0.097 0.903 25 H 0.085 0.915 26 H 0.080 0.920 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.169 0.831 30 H -0.003 1.003 31 H 0.038 0.962 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.942 10.972 9.178 16.362 hybrid contribution -0.288 1.265 -1.322 1.852 sum -8.231 12.238 7.856 16.710 Atomic orbital electron populations 1.22773 0.82062 1.02620 0.99252 1.88011 1.18516 1.27081 1.94568 1.22989 0.94762 0.84371 0.95552 0.92523 1.22825 0.97474 1.00228 0.97312 1.22385 0.95802 0.98259 0.99585 1.22455 0.97156 0.99631 0.95937 1.22239 0.91849 0.93045 0.95930 0.94097 1.60509 1.18699 1.11441 1.39131 1.20058 0.91831 0.97810 0.86837 1.21098 1.27491 0.91629 1.14695 0.90244 1.24911 0.96305 0.95450 0.96787 1.69906 1.37138 1.19133 1.28003 0.86828 0.80227 0.83409 0.79062 1.20187 1.21293 1.19355 0.94486 0.89668 0.94602 0.92269 0.90257 0.91493 0.91982 0.89884 0.92242 0.83122 1.00268 0.96206 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.85 101.05 1.10 1.45 16 2 O -0.36 -5.93 8.29 -35.23 -0.29 -6.22 16 3 C 0.08 1.22 3.37 -25.61 -0.09 1.14 16 4 H 0.06 0.75 7.81 -51.93 -0.41 0.35 16 5 C -0.14 -1.79 6.56 -25.07 -0.16 -1.95 16 6 C -0.12 -1.52 6.91 -24.74 -0.17 -1.69 16 7 C -0.11 -1.82 6.49 -25.07 -0.16 -1.98 16 8 C 0.08 1.45 3.25 -66.59 -0.22 1.23 16 9 H 0.04 0.74 7.81 -51.93 -0.41 0.34 16 10 N -0.66 -14.85 6.02 -106.81 -0.64 -15.49 16 11 C 0.16 4.16 4.34 -4.97 -0.02 4.14 16 12 C -0.51 -15.24 9.87 -34.44 -0.34 -15.58 16 13 H 0.08 2.58 8.06 -52.48 -0.42 2.15 16 14 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 15 N -0.90 -28.48 13.96 55.43 0.77 -27.70 16 16 Si 0.88 22.22 27.47 -169.99 -4.67 17.55 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.27 -6.58 6.54 56.52 0.37 -6.21 16 20 H 0.04 0.41 8.10 -51.93 -0.42 -0.01 16 21 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 23 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.08 1.08 8.08 -51.92 -0.42 0.66 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 27 H 0.08 1.48 8.05 -51.93 -0.42 1.06 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.35 7.88 6.87 -39.29 -0.27 7.61 16 30 H -0.02 -0.52 7.12 -51.93 -0.37 -0.89 16 31 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 32 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 260.22 15.07 3.92 3.92 Total: -1.00 -31.89 260.22 -6.30 -38.19 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -5.23 Total: 1.09 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -0.16 Total: -11.35 kcal Atomic # 7 Polarization: -43.32 SS G_CDS: 0.13 Total: -43.19 kcal Atomic # 8 Polarization: -5.93 SS G_CDS: -0.29 Total: -6.22 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -4.67 Total: 17.55 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -31.89 -6.30 -38.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050373467.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.638 kcal (2) G-P(sol) polarization free energy of solvation -31.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds