Wall clock time and date at job start Mon Mar 30 2020 02:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00034 * 2 1 4 4 H 1.09002 * 110.01681 * 330.69932 * 3 2 1 5 5 C 1.54266 * 110.07332 * 92.11745 * 3 2 1 6 6 C 1.54885 * 104.19741 * 142.91793 * 5 3 2 7 7 C 1.54888 * 102.74932 * 322.05670 * 6 5 3 8 8 C 1.53873 * 110.03411 * 209.30898 * 3 2 1 9 9 H 1.08996 * 110.03511 * 121.37977 * 8 3 2 10 10 N 1.46902 * 110.03028 * 359.95043 * 8 3 2 11 11 C 1.46903 * 110.99710 * 155.00128 * 10 8 3 12 12 C 1.50702 * 109.47160 * 180.02562 * 11 10 8 13 13 H 1.08007 * 119.99727 * 359.97438 * 12 11 10 14 14 C 1.37869 * 120.00459 * 179.97438 * 12 11 10 15 15 N 1.31512 * 120.00392 * 179.97438 * 14 12 11 16 16 Si 1.86805 * 119.99737 * 359.97438 * 14 12 11 17 17 H 1.48500 * 109.47163 * 90.00129 * 16 14 12 18 18 H 1.48505 * 109.47193 * 209.99871 * 16 14 12 19 19 H 1.48500 * 109.47075 * 330.00062 * 16 14 12 20 20 H 1.09004 * 109.46772 * 60.00593 * 1 2 3 21 21 H 1.09000 * 109.46667 * 179.97438 * 1 2 3 22 22 H 1.08999 * 109.47296 * 300.00134 * 1 2 3 23 23 H 1.08997 * 110.48660 * 261.59861 * 5 3 2 24 24 H 1.09009 * 110.48346 * 24.23668 * 5 3 2 25 25 H 1.09003 * 110.75826 * 203.74253 * 6 5 3 26 26 H 1.08995 * 110.75781 * 80.37118 * 6 5 3 27 27 H 1.08998 * 110.48749 * 279.26537 * 7 6 5 28 28 H 1.09000 * 110.60155 * 156.67434 * 7 6 5 29 29 H 1.00899 * 111.00073 * 31.04679 * 10 8 3 30 30 H 1.08996 * 109.47355 * 299.99838 * 11 10 8 31 31 H 1.08996 * 109.47390 * 60.00091 * 11 10 8 32 32 H 0.97003 * 120.00240 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3461 2.0096 -0.5012 5 6 2.2745 1.7674 1.4480 6 6 3.6099 2.5472 1.3602 7 6 4.4229 1.7183 0.3350 8 6 3.3762 1.2743 -0.7077 9 1 3.3750 1.9632 -1.5523 10 7 3.6727 -0.0884 -1.1695 11 6 4.6027 -0.0682 -2.3064 12 6 4.8822 -1.4804 -2.7520 13 1 4.4158 -2.3101 -2.2413 14 6 5.7330 -1.7135 -3.8115 15 7 5.9773 -2.9460 -4.2000 16 14 6.5391 -0.2786 -4.6952 17 1 7.8362 0.0376 -4.0451 18 1 6.7729 -0.6407 -6.1163 19 1 5.6488 0.9080 -4.6268 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.4730 2.4210 1.7922 24 1 2.3776 0.9074 2.1099 25 1 4.1115 2.5643 2.3278 26 1 3.4426 3.5595 0.9926 27 1 4.8730 0.8506 0.8172 28 1 5.1906 2.3342 -0.1335 29 1 2.8252 -0.5830 -1.4043 30 1 4.1581 0.4908 -3.1297 31 1 5.5350 0.4092 -2.0048 32 1 6.5762 -3.1100 -4.9452 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050373467.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:53 Heat of formation + Delta-G solvation = -73.138750 kcal Electronic energy + Delta-G solvation = -13124.768114 eV Core-core repulsion = 10891.102611 eV Total energy + Delta-G solvation = -2233.665503 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.24815 -37.22432 -35.74943 -34.10724 -29.99574 -29.10265 -27.32431 -26.49595 -23.28698 -21.64220 -20.83195 -18.98004 -17.72191 -17.12264 -16.37670 -16.03272 -15.88147 -15.20419 -15.05345 -14.57088 -14.34309 -13.70293 -13.48178 -12.96135 -12.62265 -12.34786 -12.28387 -11.99256 -11.86706 -11.79498 -11.65421 -11.44431 -11.36145 -10.81697 -10.44339 -9.04436 -8.30844 -6.35348 1.32700 1.34992 1.46235 2.33081 2.80378 3.02595 3.62631 3.67173 3.75060 4.16280 4.32572 4.46151 4.51157 4.52090 4.62682 4.76885 4.78962 4.84296 4.92998 5.05254 5.05784 5.12551 5.19279 5.29981 5.47938 5.55529 5.98770 6.34712 6.64061 6.70759 6.88663 7.29876 8.86264 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042587 B = 0.009212 C = 0.008093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.314579 B = 3038.725775 C = 3458.850184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.399 6.399 3 C 0.081 3.919 4 H 0.078 0.922 5 C -0.134 4.134 6 C -0.111 4.111 7 C -0.117 4.117 8 C 0.069 3.931 9 H 0.042 0.958 10 N -0.675 5.675 11 C 0.177 3.823 12 C -0.528 4.528 13 H 0.033 0.967 14 C 0.006 3.994 15 N -0.948 5.948 16 Si 0.954 3.046 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.252 1.252 20 H 0.045 0.955 21 H 0.088 0.912 22 H 0.057 0.943 23 H 0.090 0.910 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.341 0.659 30 H -0.019 1.019 31 H 0.022 0.978 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.056 14.207 9.272 19.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.318 6.318 3 C 0.023 3.977 4 H 0.096 0.904 5 C -0.172 4.172 6 C -0.148 4.148 7 C -0.155 4.155 8 C -0.042 4.042 9 H 0.059 0.941 10 N -0.309 5.309 11 C 0.048 3.952 12 C -0.566 4.566 13 H 0.051 0.949 14 C -0.191 4.191 15 N -0.589 5.589 16 Si 0.777 3.223 17 H -0.189 1.189 18 H -0.203 1.203 19 H -0.176 1.176 20 H 0.064 0.936 21 H 0.107 0.893 22 H 0.076 0.924 23 H 0.108 0.892 24 H 0.084 0.916 25 H 0.100 0.900 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.162 0.838 30 H -0.002 1.002 31 H 0.040 0.960 32 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.386 13.821 9.609 18.806 hybrid contribution -0.220 0.282 -1.405 1.450 sum -8.606 14.102 8.204 18.446 Atomic orbital electron populations 1.22954 0.79999 1.03448 1.00715 1.87956 1.20900 1.28113 1.94824 1.23061 0.93274 0.84496 0.96861 0.90410 1.22798 0.98678 1.00277 0.95442 1.22369 0.94814 0.98504 0.99146 1.22448 0.97275 0.99372 0.96412 1.22498 0.94778 0.90267 0.96656 0.94052 1.60423 1.18266 1.14691 1.37530 1.19782 0.92722 0.94802 0.87908 1.21349 1.27644 0.92692 1.14948 0.94884 1.25922 0.96807 0.98805 0.97576 1.70062 1.38078 1.21846 1.28866 0.85613 0.79428 0.79505 0.77738 1.18888 1.20316 1.17630 0.93619 0.89342 0.92398 0.89157 0.91617 0.89957 0.89729 0.92467 0.91942 0.83786 1.00163 0.95995 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 10.85 113.37 1.23 1.79 16 2 O -0.40 -12.68 8.29 -148.98 -1.23 -13.91 16 3 C 0.08 2.27 3.37 31.32 0.11 2.37 16 4 H 0.08 1.82 7.81 -2.39 -0.02 1.80 16 5 C -0.13 -3.01 6.56 31.67 0.21 -2.80 16 6 C -0.11 -2.39 6.91 31.88 0.22 -2.17 16 7 C -0.12 -3.58 6.49 31.67 0.21 -3.38 16 8 C 0.07 2.38 3.25 45.64 0.15 2.53 16 9 H 0.04 1.43 7.81 -2.39 -0.02 1.41 16 10 N -0.68 -30.63 6.02 -491.82 -2.96 -33.59 16 11 C 0.18 9.07 4.34 85.56 0.37 9.44 16 12 C -0.53 -32.52 9.87 25.60 0.25 -32.27 16 13 H 0.03 2.27 8.06 -2.91 -0.02 2.24 16 14 C 0.01 0.37 5.47 84.65 0.46 0.84 16 15 N -0.95 -61.24 13.96 21.44 0.30 -60.95 16 16 Si 0.95 45.65 27.47 68.60 1.88 47.53 16 17 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.25 -11.33 6.54 99.48 0.65 -10.68 16 20 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 21 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.07 1.66 8.08 -2.38 -0.02 1.64 16 25 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.06 2.03 8.05 -2.39 -0.02 2.02 16 28 H 0.06 1.83 8.14 -2.39 -0.02 1.82 16 29 H 0.34 15.93 6.87 -89.69 -0.62 15.32 16 30 H -0.02 -0.97 7.12 -2.39 -0.02 -0.99 16 31 H 0.02 1.12 7.57 -2.39 -0.02 1.10 16 32 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 Total: -1.00 -70.49 260.22 1.60 -68.89 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.41 Total: 15.66 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 3.20 Total: -23.65 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -2.66 Total: -94.53 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: -1.23 Total: -13.91 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 1.88 Total: 47.53 kcal Total: -70.49 1.60 -68.89 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050373467.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.246 kcal (2) G-P(sol) polarization free energy of solvation -70.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds