Wall clock time and date at job start Mon Mar 30 2020 01:54:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 109.47087 * 2 1 4 4 C 1.50697 * 109.47224 * 120.00605 * 2 1 3 5 5 H 1.08002 * 119.99871 * 120.00158 * 4 2 1 6 6 C 1.37878 * 119.99786 * 299.99616 * 4 2 1 7 7 N 1.31507 * 120.00173 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99668 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47310 * 60.00015 * 8 6 4 10 10 H 1.48496 * 109.47171 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.47469 * 300.00216 * 8 6 4 12 12 N 1.46904 * 109.46705 * 240.00756 * 2 1 3 13 13 C 1.47440 * 110.99676 * 180.12582 * 12 2 1 14 14 C 1.54317 * 107.23368 * 236.73977 * 13 12 2 15 15 C 1.55144 * 103.01861 * 337.71644 * 14 13 12 16 16 H 1.09000 * 110.99290 * 277.56635 * 15 14 13 17 17 C 1.52996 * 110.99254 * 153.74565 * 15 14 13 18 18 O 1.42894 * 109.47270 * 66.45402 * 17 15 14 19 19 C 1.47842 * 111.00238 * 59.27972 * 12 2 1 20 20 H 1.08988 * 109.47194 * 59.99658 * 1 2 3 21 21 H 1.09000 * 109.47087 * 180.02562 * 1 2 3 22 22 H 1.08998 * 109.46799 * 299.99287 * 1 2 3 23 23 H 0.96998 * 119.99918 * 179.97438 * 7 6 4 24 24 H 1.09000 * 109.89463 * 117.33566 * 13 12 2 25 25 H 1.09001 * 110.02673 * 356.21799 * 13 12 2 26 26 H 1.08999 * 110.70846 * 96.09223 * 14 13 12 27 27 H 1.09000 * 110.71111 * 219.33808 * 14 13 12 28 28 H 1.09009 * 109.47248 * 186.45620 * 17 15 14 29 29 H 1.09001 * 109.47091 * 306.44802 * 17 15 14 30 30 H 0.96708 * 113.99740 * 179.97438 * 18 17 15 31 31 H 1.09004 * 110.37187 * 265.19138 * 19 12 2 32 32 H 1.09002 * 110.37256 * 27.42242 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6534 -1.5886 1.1311 6 6 1.6994 -0.2395 2.4827 7 7 0.9430 0.8294 2.6034 8 14 2.3227 -1.1199 4.0077 9 1 3.8077 -1.1193 4.0075 10 1 1.8282 -0.4197 5.2203 11 1 1.8283 -2.5202 4.0079 12 7 2.0196 -0.6924 -1.1996 13 6 3.4935 -0.7147 -1.2322 14 6 3.9315 -0.0571 -2.5577 15 6 2.6765 -0.2127 -3.4565 16 1 2.6413 -1.2033 -3.9099 17 6 2.6300 0.8796 -4.5268 18 8 3.7154 0.6996 -5.4385 19 6 1.5315 -0.0319 -2.4289 20 1 -0.3633 0.5138 -0.8898 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5137 0.8900 23 1 0.7084 1.1605 3.4845 24 1 3.8498 -1.7441 -1.1935 25 1 3.8941 -0.1518 -0.3890 26 1 4.1684 0.9959 -2.4058 27 1 4.7817 -0.5864 -2.9881 28 1 1.6861 0.8174 -5.0686 29 1 2.7125 1.8573 -4.0519 30 1 3.7482 1.3582 -6.1459 31 1 0.6223 -0.5167 -2.7847 32 1 1.3488 1.0267 -2.2440 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051887286.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:29 Heat of formation + Delta-G solvation = -53.223507 kcal Electronic energy + Delta-G solvation = -13235.093033 eV Core-core repulsion = 11002.291120 eV Total energy + Delta-G solvation = -2232.801913 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.65013 -36.47255 -33.74114 -31.34892 -29.32251 -27.55836 -25.41767 -24.14574 -21.27153 -19.85163 -19.33336 -17.20458 -16.08111 -15.63524 -15.19355 -14.21404 -14.18340 -13.14723 -12.99189 -12.64020 -12.43784 -11.77162 -11.61461 -11.13564 -10.87041 -10.69864 -10.59466 -10.46669 -10.26467 -10.14194 -9.92776 -9.78663 -9.69344 -8.89182 -8.40898 -7.13297 -5.98849 -4.03029 3.34171 3.38030 3.41565 4.24665 4.44648 4.91115 5.11337 5.28315 5.32085 5.50701 5.62051 5.68664 5.85353 5.99066 6.18162 6.34148 6.41316 6.60151 6.75329 6.83037 6.88204 7.08991 7.10878 7.53064 7.63818 7.73202 7.87121 8.21914 8.37040 8.61503 9.03893 9.61908 11.08024 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.063799 B = 0.008515 C = 0.007916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.774566 B = 3287.513739 C = 3536.496618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.208 3.792 3 H -0.002 1.002 4 C -0.502 4.502 5 H 0.061 0.939 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.525 5.525 13 C 0.052 3.948 14 C -0.130 4.130 15 C -0.100 4.100 16 H 0.084 0.916 17 C 0.086 3.914 18 O -0.573 6.573 19 C 0.054 3.946 20 H 0.006 0.994 21 H 0.034 0.966 22 H 0.085 0.915 23 H 0.261 0.739 24 H 0.061 0.939 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.373 0.627 31 H 0.068 0.932 32 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.569 1.130 -10.851 11.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.102 3.898 3 H 0.016 0.984 4 C -0.541 4.541 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.250 5.250 13 C -0.076 4.076 14 C -0.168 4.168 15 C -0.119 4.119 16 H 0.102 0.898 17 C 0.008 3.992 18 O -0.378 6.378 19 C -0.074 4.074 20 H 0.025 0.975 21 H 0.053 0.947 22 H 0.103 0.897 23 H 0.070 0.930 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.219 0.781 31 H 0.087 0.913 32 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 2.406 0.230 -10.245 10.526 hybrid contribution 0.380 0.932 0.510 1.128 sum 2.786 1.162 -9.735 10.193 Atomic orbital electron populations 1.21818 0.97777 0.99636 0.99859 1.19441 0.92385 0.91821 0.86202 0.98428 1.21110 1.30921 1.12269 0.89783 0.92041 1.24932 0.95249 0.95093 0.99014 1.69880 1.36990 1.23106 1.23479 0.86574 0.79081 0.79784 0.82045 1.20354 1.21378 1.20205 1.63691 1.06913 1.52280 1.02111 1.22639 0.89409 0.99895 0.95672 1.22789 0.97253 1.00613 0.96168 1.22328 0.96689 0.98642 0.94262 0.89805 1.22171 0.88494 0.98029 0.90478 1.86504 1.51429 1.56872 1.42971 1.22895 0.96527 0.97367 0.90651 0.97485 0.94705 0.89690 0.92960 0.92087 0.91807 0.92265 0.91546 0.93780 0.93734 0.78058 0.91316 0.94363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 8.86 37.16 0.33 -2.99 16 2 C 0.21 5.38 1.65 -68.86 -0.11 5.27 16 3 H 0.00 -0.05 8.10 -51.93 -0.42 -0.47 16 4 C -0.50 -14.06 7.69 -34.44 -0.26 -14.33 16 5 H 0.06 1.73 7.43 -52.49 -0.39 1.34 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.53 16 7 N -0.90 -25.82 11.32 55.43 0.63 -25.20 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.52 -11.77 5.02 -224.67 -1.13 -12.90 16 13 C 0.05 1.07 6.04 -2.84 -0.02 1.05 16 14 C -0.13 -2.22 6.27 -24.91 -0.16 -2.38 16 15 C -0.10 -1.61 3.32 -88.48 -0.29 -1.91 16 16 H 0.08 1.37 8.14 -51.93 -0.42 0.94 16 17 C 0.09 1.14 6.49 37.16 0.24 1.38 16 18 O -0.57 -7.26 13.51 -35.23 -0.48 -7.73 16 19 C 0.05 1.01 4.87 -2.30 -0.01 1.00 16 20 H 0.01 0.14 7.04 -51.94 -0.37 -0.23 16 21 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.06 1.43 7.05 -51.93 -0.37 1.06 16 26 H 0.06 1.00 8.01 -51.93 -0.42 0.59 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.04 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.04 0.57 8.11 -51.93 -0.42 0.15 16 30 H 0.37 2.82 9.12 45.56 0.42 3.23 16 31 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.04 0.73 7.47 -51.93 -0.39 0.34 16 LS Contribution 256.76 15.07 3.87 3.87 Total: -1.00 -30.23 256.76 -6.85 -37.08 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.34 Total: -0.35 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -0.38 Total: -11.38 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.50 Total: -38.10 kcal Atomic # 8 Polarization: -7.26 SS G_CDS: -0.48 Total: -7.73 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -30.23 -6.85 -37.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051887286.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.141 kcal (2) G-P(sol) polarization free energy of solvation -30.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds