Wall clock time and date at job start Mon Mar 30 2020 02:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31324 * 1 3 3 Si 1.86801 * 120.00013 * 2 1 4 4 H 1.48499 * 109.47243 * 270.00367 * 3 2 1 5 5 H 1.48497 * 109.46730 * 30.00224 * 3 2 1 6 6 H 1.48503 * 109.47004 * 149.99859 * 3 2 1 7 7 C 1.38989 * 119.99989 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99618 * 197.78295 * 7 2 1 9 9 N 1.37104 * 120.00095 * 17.78322 * 7 2 1 10 10 C 1.37188 * 119.69108 * 28.26556 * 9 7 2 11 11 C 1.35132 * 119.62384 * 179.97438 * 10 9 7 12 12 F 1.35104 * 120.46498 * 180.02562 * 11 10 9 13 13 C 1.41922 * 119.05872 * 359.97438 * 11 10 9 14 14 O 1.21781 * 120.30096 * 179.97438 * 13 11 10 15 15 N 1.34829 * 119.38494 * 0.02562 * 13 11 10 16 16 H 0.96999 * 119.83373 * 180.02562 * 15 13 11 17 17 C 1.34539 * 119.68970 * 208.51222 * 9 7 2 18 18 O 1.21563 * 119.50441 * 0.02562 * 17 9 7 19 19 H 0.96997 * 120.00029 * 359.97438 * 1 2 3 20 20 H 1.07994 * 120.18717 * 359.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3132 0.0000 0.0000 3 14 2.2473 1.6177 0.0000 4 1 2.4947 2.0465 -1.4000 5 1 1.4447 2.6526 0.7001 6 1 3.5448 1.4402 0.7001 7 6 2.0082 -1.2037 -0.0005 8 1 3.0495 -1.2261 0.2851 9 7 1.3718 -2.3625 -0.3637 10 6 0.3184 -2.3130 -1.2411 11 6 -0.3075 -3.4561 -1.5985 12 9 -1.3464 -3.4271 -2.4617 13 6 0.1427 -4.6874 -1.0551 14 8 -0.4052 -5.7310 -1.3613 15 7 1.1818 -4.6909 -0.1959 16 1 1.4951 -5.5288 0.1791 17 6 1.7831 -3.5370 0.1476 18 8 2.7155 -3.5568 0.9273 19 1 -0.4850 0.8400 0.0004 20 1 -0.0088 -1.3659 -1.6439 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070152472.mol2 20 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:28 Heat of formation + Delta-G solvation = -85.878473 kcal Electronic energy + Delta-G solvation = -12701.647125 eV Core-core repulsion = 10006.876781 eV Total energy + Delta-G solvation = -2694.770344 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.038 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -47.76350 -41.22759 -38.07226 -36.33483 -34.23979 -32.44952 -29.83777 -25.75238 -24.13298 -22.39687 -19.54430 -18.57890 -17.10536 -16.38029 -16.12999 -15.61969 -14.96424 -14.37239 -14.30892 -13.84123 -13.56662 -13.30334 -12.22890 -12.03769 -11.53681 -11.42177 -10.75284 -10.54293 -10.00670 -9.61140 -9.51729 -9.23652 -7.66183 -7.01842 -4.73148 1.82721 2.68967 2.86964 2.94789 2.99889 3.15301 3.75809 4.07066 4.23864 4.61169 4.95551 5.71414 6.19327 6.52253 6.79333 6.92141 6.99179 7.57328 7.76503 8.25657 8.36381 8.53780 9.01546 9.98606 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.046989 B = 0.013653 C = 0.010932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.736692 B = 2050.395587 C = 2560.749145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.046 3.954 3 Si 0.949 3.051 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.261 1.261 7 C -0.342 4.342 8 H 0.125 0.875 9 N -0.338 5.338 10 C 0.198 3.802 11 C -0.176 4.176 12 F -0.127 7.127 13 C 0.535 3.465 14 O -0.553 6.553 15 N -0.651 5.651 16 H 0.422 0.578 17 C 0.650 3.350 18 O -0.555 6.555 19 H 0.288 0.712 20 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.517 1.527 -1.760 2.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.164 4.164 3 Si 0.773 3.227 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.185 1.185 7 C -0.468 4.468 8 H 0.142 0.858 9 N -0.039 5.039 10 C 0.062 3.938 11 C -0.205 4.205 12 F -0.106 7.106 13 C 0.333 3.667 14 O -0.433 6.433 15 N -0.319 5.319 16 H 0.263 0.737 17 C 0.355 3.645 18 O -0.431 6.431 19 H 0.099 0.901 20 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.612 1.282 -1.461 2.526 hybrid contribution 0.012 0.410 0.136 0.433 sum 1.625 1.693 -1.325 2.694 Atomic orbital electron populations 1.69788 1.06464 1.30153 1.42046 1.25682 0.95732 1.01136 0.93866 0.85552 0.79486 0.78416 0.79275 1.19190 1.20128 1.18515 1.20034 0.96963 0.80805 1.48987 0.85791 1.40642 1.25360 1.06415 1.31462 1.22432 0.86156 0.99569 0.85675 1.16797 1.00656 0.92317 1.10692 1.91393 1.55022 1.96653 1.67556 1.17124 0.80045 0.90199 0.79378 1.90831 1.57114 1.33903 1.61499 1.44496 1.32439 1.10759 1.44170 0.73744 1.16470 0.84908 0.80847 0.82280 1.90900 1.29940 1.85225 1.37055 0.90068 0.79800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -19.70 11.16 55.50 0.62 -19.09 14 2 C 0.05 1.01 5.01 -17.49 -0.09 0.93 14 3 Si 0.95 17.22 29.59 -169.99 -5.03 12.19 14 4 H -0.27 -4.71 7.11 56.52 0.40 -4.31 14 5 H -0.28 -4.99 7.11 56.52 0.40 -4.59 14 6 H -0.26 -4.75 7.11 56.52 0.40 -4.35 14 7 C -0.34 -8.12 9.07 -14.92 -0.14 -8.26 14 8 H 0.12 2.96 7.52 -52.48 -0.39 2.56 14 9 N -0.34 -7.93 2.76 -66.27 -0.18 -8.11 14 10 C 0.20 4.40 9.11 -16.26 -0.15 4.25 14 11 C -0.18 -3.92 7.32 -39.28 -0.29 -4.21 14 12 F -0.13 -2.82 17.15 2.25 0.04 -2.78 14 13 C 0.53 11.92 7.74 -14.83 -0.11 11.80 14 14 O -0.55 -13.36 17.83 5.12 0.09 -13.27 14 15 N -0.65 -13.32 5.23 -18.41 -0.10 -13.42 14 16 H 0.42 7.40 8.88 -40.82 -0.36 7.04 14 17 C 0.65 14.94 8.33 -87.31 -0.73 14.22 14 18 O -0.55 -13.75 16.84 5.31 0.09 -13.66 14 19 H 0.29 6.14 8.31 -40.82 -0.34 5.81 14 20 H 0.19 4.02 6.22 -52.49 -0.33 3.70 14 LS Contribution 199.37 15.07 3.00 3.00 Total: -1.00 -27.36 199.37 -3.18 -30.55 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -0.22 Total: 5.85 kcal Atomic # 6 Polarization: 20.23 SS G_CDS: -1.50 Total: 18.73 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.34 Total: -40.61 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: 0.18 Total: -26.93 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.04 Total: -2.78 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 3.00 Total: 3.00 kcal Total: -27.36 -3.18 -30.55 kcal The number of atoms in the molecule is 20 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070152472.mol2 20 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.331 kcal (2) G-P(sol) polarization free energy of solvation -27.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds