Wall clock time and date at job start Mon Mar 30 2020 01:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46899 * 109.46986 * 120.00260 * 2 1 3 13 13 C 1.46902 * 111.00131 * 274.99873 * 12 2 1 14 14 C 1.52996 * 109.47211 * 180.02562 * 13 12 2 15 15 H 1.08999 * 109.47213 * 305.00443 * 14 13 12 16 16 O 1.42895 * 109.47117 * 65.00287 * 14 13 12 17 17 C 1.52998 * 109.46902 * 185.00293 * 14 13 12 18 18 C 1.53001 * 117.49716 * 248.74564 * 17 14 13 19 19 C 1.53007 * 117.49622 * 180.08965 * 17 14 13 20 20 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 21 21 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 22 22 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 23 23 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 24 24 H 1.00898 * 110.99583 * 151.04841 * 12 2 1 25 25 H 1.08997 * 109.46953 * 300.00617 * 13 12 2 26 26 H 1.09002 * 109.46573 * 60.00322 * 13 12 2 27 27 H 0.96705 * 114.00326 * 59.99910 * 16 14 13 28 28 H 1.08999 * 115.55541 * 34.41560 * 17 14 13 29 29 H 1.08997 * 117.50184 * 0.02562 * 18 17 14 30 30 H 1.09003 * 117.50096 * 145.02622 * 18 17 14 31 31 H 1.09003 * 117.49389 * 214.97789 * 19 17 14 32 32 H 1.09000 * 117.49863 * 359.97438 * 19 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5963 -0.5330 3.5741 15 1 1.9711 -1.4084 3.7499 16 8 3.9446 -0.9485 3.3478 17 6 2.5439 0.3850 4.7970 18 6 3.8761 0.8437 5.3935 19 6 3.0215 -0.1892 6.1324 20 1 -0.3633 0.5137 0.8899 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3632 -1.0277 -0.0005 23 1 1.9111 -0.5221 -4.4375 24 1 2.9174 -1.1205 1.0286 25 1 2.7589 1.0461 2.1182 26 1 1.0871 0.6161 2.5525 27 1 4.5586 -0.2196 3.1838 28 1 1.7127 1.0897 4.8206 29 1 4.7898 0.4918 4.9145 30 1 3.9212 1.8500 5.8099 31 1 2.5047 0.1381 7.0345 32 1 3.3726 -1.2211 6.1397 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070886137.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:43 Heat of formation + Delta-G solvation = -50.499533 kcal Electronic energy + Delta-G solvation = -12908.649937 eV Core-core repulsion = 10675.966145 eV Total energy + Delta-G solvation = -2232.683793 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.94490 -37.63523 -35.89735 -34.45246 -31.99678 -28.79790 -27.13356 -23.97439 -23.18892 -21.82826 -21.22669 -18.96402 -17.71188 -17.42595 -16.82087 -16.19002 -15.64444 -15.20870 -14.74288 -14.63479 -14.05544 -13.62056 -13.40703 -13.02174 -12.71496 -12.61325 -12.31996 -12.08997 -12.03605 -11.47641 -11.40937 -11.15470 -11.02492 -10.81623 -10.61555 -9.15918 -8.33094 -6.38367 1.29708 1.33734 1.44908 2.29299 2.85876 3.01630 3.25653 3.59795 3.91869 4.00219 4.08144 4.35876 4.37999 4.46428 4.53276 4.70848 4.77182 4.81592 4.87710 4.98144 5.05138 5.17040 5.25148 5.30120 5.47939 5.61572 5.97473 6.49238 6.62945 6.76994 6.83655 7.28399 8.83622 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.064484 B = 0.007531 C = 0.007177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 434.108668 B = 3717.141912 C = 3900.214574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.185 3.815 3 H -0.004 1.004 4 C -0.528 4.528 5 H 0.037 0.963 6 C 0.013 3.987 7 N -0.947 5.947 8 Si 0.956 3.044 9 H -0.265 1.265 10 H -0.250 1.250 11 H -0.296 1.296 12 N -0.682 5.682 13 C 0.032 3.968 14 C 0.146 3.854 15 H 0.096 0.904 16 O -0.571 6.571 17 C -0.196 4.196 18 C -0.174 4.174 19 C -0.168 4.168 20 H 0.058 0.942 21 H 0.032 0.968 22 H 0.050 0.950 23 H 0.267 0.733 24 H 0.338 0.662 25 H 0.026 0.974 26 H 0.080 0.920 27 H 0.381 0.619 28 H 0.118 0.882 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.119 6.503 17.197 18.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.075 3.925 3 H 0.014 0.986 4 C -0.566 4.566 5 H 0.055 0.945 6 C -0.185 4.185 7 N -0.586 5.586 8 Si 0.783 3.217 9 H -0.191 1.191 10 H -0.174 1.174 11 H -0.224 1.224 12 N -0.313 5.313 13 C -0.097 4.097 14 C 0.087 3.913 15 H 0.114 0.886 16 O -0.379 6.379 17 C -0.215 4.215 18 C -0.211 4.211 19 C -0.205 4.205 20 H 0.077 0.923 21 H 0.050 0.950 22 H 0.069 0.931 23 H 0.076 0.924 24 H 0.156 0.844 25 H 0.044 0.956 26 H 0.098 0.902 27 H 0.230 0.770 28 H 0.136 0.864 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.993 5.663 17.275 18.207 hybrid contribution 0.611 1.346 -1.059 1.818 sum -0.383 7.009 16.216 17.670 Atomic orbital electron populations 1.21988 0.97208 1.01013 0.99001 1.19397 0.92905 0.92109 0.88061 0.98614 1.21419 1.31541 1.12745 0.90907 0.94507 1.25845 0.97251 1.00174 0.95237 1.70045 1.47438 1.42519 0.98646 0.85740 0.79107 0.79594 0.77256 1.19105 1.17419 1.22378 1.60441 1.33196 1.32883 1.04820 1.22703 1.01162 0.94098 0.91764 1.21349 0.82817 0.96573 0.90604 0.88593 1.86579 1.19061 1.38570 1.93673 1.23032 1.00335 1.03392 0.94702 1.23046 0.94386 1.00006 1.03614 1.22954 1.03643 0.98990 0.94902 0.92293 0.94976 0.93127 0.92370 0.84440 0.95553 0.90169 0.76994 0.86438 0.88241 0.87532 0.87485 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.80 8.89 71.99 0.64 -5.16 16 2 C 0.18 8.76 2.19 44.17 0.10 8.86 16 3 H 0.00 -0.17 6.86 -2.39 -0.02 -0.19 16 4 C -0.53 -30.67 9.17 25.60 0.23 -30.44 16 5 H 0.04 2.38 7.86 -2.91 -0.02 2.36 16 6 C 0.01 0.74 5.45 84.65 0.46 1.21 16 7 N -0.95 -59.68 13.96 21.45 0.30 -59.38 16 8 Si 0.96 45.23 24.37 68.60 1.67 46.91 16 9 H -0.27 -11.94 6.88 99.48 0.68 -11.25 16 10 H -0.25 -10.97 6.52 99.48 0.65 -10.32 16 11 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 12 N -0.68 -28.11 6.30 -495.43 -3.12 -31.23 16 13 C 0.03 1.02 5.14 86.30 0.44 1.46 16 14 C 0.15 3.87 3.57 30.59 0.11 3.98 16 15 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 16 O -0.57 -15.86 12.01 -148.98 -1.79 -17.65 16 17 C -0.20 -3.98 5.71 -10.79 -0.06 -4.05 16 18 C -0.17 -3.00 9.74 30.62 0.30 -2.70 16 19 C -0.17 -3.03 10.19 30.62 0.31 -2.71 16 20 H 0.06 2.12 7.45 -2.39 -0.02 2.11 16 21 H 0.03 1.40 3.28 -2.39 -0.01 1.39 16 22 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 23 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 24 H 0.34 14.74 7.78 -89.70 -0.70 14.04 16 25 H 0.03 0.82 8.05 -2.39 -0.02 0.80 16 26 H 0.08 2.38 7.44 -2.39 -0.02 2.36 16 27 H 0.38 8.38 7.56 -74.05 -0.56 7.82 16 28 H 0.12 2.19 8.11 -2.39 -0.02 2.17 16 29 H 0.10 1.71 6.37 -2.39 -0.02 1.69 16 30 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -65.70 256.98 -0.63 -66.33 By element: Atomic # 1 Polarization: 24.79 SS G_CDS: -0.22 Total: 24.57 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: 2.53 Total: -29.54 kcal Atomic # 7 Polarization: -87.78 SS G_CDS: -2.82 Total: -90.61 kcal Atomic # 8 Polarization: -15.86 SS G_CDS: -1.79 Total: -17.65 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.67 Total: 46.91 kcal Total: -65.70 -0.63 -66.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070886137.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.828 kcal (2) G-P(sol) polarization free energy of solvation -65.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds