Wall clock time and date at job start Mon Mar 30 2020 01:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47443 * 2 1 4 4 C 1.50702 * 109.46983 * 240.00554 * 2 1 3 5 5 H 1.08008 * 119.99988 * 243.17687 * 4 2 1 6 6 C 1.37872 * 120.00267 * 63.17917 * 4 2 1 7 7 N 1.31523 * 119.99933 * 6.63831 * 6 4 2 8 8 Si 1.86801 * 120.00323 * 186.64042 * 6 4 2 9 9 H 1.48497 * 109.47370 * 94.94259 * 8 6 4 10 10 H 1.48506 * 109.47212 * 214.94508 * 8 6 4 11 11 H 1.48502 * 109.46896 * 334.94199 * 8 6 4 12 12 N 1.46895 * 109.47201 * 120.00713 * 2 1 3 13 13 C 1.46907 * 110.99726 * 274.43733 * 12 2 1 14 14 H 1.08992 * 109.52446 * 33.84807 * 13 12 2 15 15 C 1.53181 * 109.52113 * 273.65527 * 13 12 2 16 16 C 1.53174 * 109.03588 * 183.11159 * 15 13 12 17 17 C 1.53095 * 109.15919 * 56.98434 * 16 15 13 18 18 O 1.42896 * 109.41611 * 302.38957 * 17 16 15 19 19 C 1.42899 * 114.09864 * 61.15912 * 18 17 16 20 20 H 1.09001 * 109.46788 * 62.97745 * 1 2 3 21 21 H 1.09000 * 109.46689 * 182.97465 * 1 2 3 22 22 H 1.08995 * 109.46631 * 302.97540 * 1 2 3 23 23 H 0.96996 * 120.00095 * 180.02562 * 7 6 4 24 24 H 1.00894 * 111.00374 * 38.38742 * 12 2 1 25 25 H 1.08998 * 109.54529 * 302.98442 * 15 13 12 26 26 H 1.09002 * 109.54118 * 63.24751 * 15 13 12 27 27 H 1.08999 * 109.52456 * 297.08200 * 16 15 13 28 28 H 1.09001 * 109.57374 * 176.91814 * 16 15 13 29 29 H 1.09007 * 109.47649 * 182.40501 * 17 16 15 30 30 H 1.09001 * 109.48043 * 62.37673 * 17 16 15 31 31 H 1.09003 * 109.47997 * 178.85780 * 19 18 17 32 32 H 1.09003 * 109.48760 * 58.83318 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6103 -1.6175 -1.1324 6 6 1.7542 -0.2022 -2.4817 7 7 1.1651 0.9677 -2.6003 8 14 2.2140 -1.1753 -4.0085 9 1 1.0440 -1.9709 -4.4594 10 1 2.6221 -0.2400 -5.0874 11 1 3.3415 -2.0886 -3.6924 12 7 2.0197 -0.6926 1.1993 13 6 2.0951 0.2256 2.3436 14 1 1.2882 0.9554 2.2788 15 6 3.4447 0.9501 2.3303 16 6 3.5432 1.8455 3.5692 17 6 3.3558 0.9892 4.8243 18 8 2.0953 0.3192 4.7584 19 6 1.9637 -0.5681 3.6460 20 1 -0.3633 0.4669 -0.9155 21 1 -0.3633 -1.0263 0.0533 22 1 -0.3632 0.5593 0.8621 23 1 0.9691 1.3251 -3.4804 24 1 1.4442 -1.4927 1.4152 25 1 4.2519 0.2178 2.3446 26 1 3.5214 1.5618 1.4314 27 1 2.7661 2.6088 3.5297 28 1 4.5223 2.3236 3.5973 29 1 3.3823 1.6278 5.7073 30 1 4.1566 0.2521 4.8844 31 1 0.9873 -1.0515 3.6802 32 1 2.7461 -1.3258 3.6906 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071013708.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:11 Heat of formation + Delta-G solvation = -59.381228 kcal Electronic energy + Delta-G solvation = -13239.856158 eV Core-core repulsion = 11006.787226 eV Total energy + Delta-G solvation = -2233.068932 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.11583 -35.91132 -33.13775 -32.10984 -30.03989 -26.79765 -25.13460 -24.68851 -22.43827 -20.28574 -19.55811 -16.58288 -15.85966 -15.65916 -14.83862 -14.71521 -14.17738 -13.81992 -13.13466 -12.69605 -12.28358 -12.16855 -11.66393 -11.35259 -10.98598 -10.91299 -10.74464 -10.63225 -10.47764 -10.17304 -10.07605 -9.87176 -9.12151 -8.97780 -8.33361 -7.28763 -5.99362 -4.00181 3.32690 3.39557 3.43888 4.03291 4.45357 5.03762 5.15931 5.20116 5.27500 5.33544 5.45781 5.57404 5.71516 5.81886 6.00609 6.11546 6.24805 6.38687 6.61424 6.65875 6.75320 6.79268 7.06735 7.27102 7.43897 7.65226 7.89333 8.24056 8.52903 8.61335 9.06718 9.64103 11.09523 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.062171 B = 0.008145 C = 0.007961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 450.262790 B = 3436.821463 C = 3516.150891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.211 3.789 3 H 0.039 0.961 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.056 3.944 7 N -0.897 5.897 8 Si 0.895 3.105 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.676 5.676 13 C 0.055 3.945 14 H 0.044 0.956 15 C -0.108 4.108 16 C -0.156 4.156 17 C 0.062 3.938 18 O -0.388 6.388 19 C 0.061 3.939 20 H 0.077 0.923 21 H 0.029 0.971 22 H 0.008 0.992 23 H 0.259 0.741 24 H 0.324 0.676 25 H 0.066 0.934 26 H 0.070 0.930 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.087 0.913 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.609 -0.218 10.703 11.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.103 3.897 3 H 0.057 0.943 4 C -0.534 4.534 5 H 0.081 0.919 6 C -0.145 4.145 7 N -0.536 5.536 8 Si 0.723 3.277 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.198 1.198 12 N -0.308 5.308 13 C -0.056 4.056 14 H 0.062 0.938 15 C -0.146 4.146 16 C -0.194 4.194 17 C -0.015 4.015 18 O -0.306 6.306 19 C -0.017 4.017 20 H 0.096 0.904 21 H 0.048 0.952 22 H 0.027 0.973 23 H 0.069 0.931 24 H 0.141 0.859 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.066 0.934 31 H 0.105 0.895 32 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.074 0.017 10.538 10.977 hybrid contribution -0.606 -0.307 -0.998 1.207 sum 2.468 -0.290 9.540 9.858 Atomic orbital electron populations 1.22391 1.01000 0.98632 1.00461 1.19217 0.89226 0.94802 0.86418 0.94337 1.21144 1.32765 1.09912 0.89613 0.91947 1.24957 0.95622 0.94891 0.99017 1.69952 1.43297 1.16909 1.23454 0.86534 0.78622 0.79861 0.82687 1.20883 1.21411 1.19849 1.60839 1.57673 1.09035 1.03225 1.22031 0.97056 0.95482 0.91025 0.93816 1.21575 0.97624 0.98335 0.97069 1.22229 1.02136 0.99170 0.95903 1.22549 0.86016 0.95054 0.97889 1.87876 1.35728 1.59989 1.46978 1.22779 1.01741 0.91587 0.85547 0.90400 0.95219 0.97260 0.93096 0.85854 0.91576 0.91144 0.91444 0.91205 0.89487 0.93391 0.89504 0.92651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 9.00 37.16 0.33 -3.64 16 2 C 0.21 5.31 2.28 -68.86 -0.16 5.15 16 3 H 0.04 1.08 7.25 -51.93 -0.38 0.70 16 4 C -0.50 -13.75 8.80 -34.44 -0.30 -14.05 16 5 H 0.06 1.75 7.82 -52.48 -0.41 1.33 16 6 C 0.06 1.56 5.22 -17.82 -0.09 1.47 16 7 N -0.90 -25.92 11.86 55.43 0.66 -25.27 16 8 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.68 -14.29 6.05 -100.81 -0.61 -14.90 16 13 C 0.05 1.01 2.50 -67.57 -0.17 0.84 16 14 H 0.04 0.88 7.18 -51.93 -0.37 0.51 16 15 C -0.11 -1.86 5.52 -26.55 -0.15 -2.00 16 16 C -0.16 -2.16 6.14 -26.59 -0.16 -2.32 16 17 C 0.06 0.80 6.84 37.21 0.25 1.05 16 18 O -0.39 -6.06 10.76 -35.23 -0.38 -6.44 16 19 C 0.06 0.95 6.10 37.20 0.23 1.17 16 20 H 0.08 2.07 6.53 -51.93 -0.34 1.73 16 21 H 0.03 0.66 8.08 -51.93 -0.42 0.24 16 22 H 0.01 0.19 7.52 -51.93 -0.39 -0.20 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.32 6.40 8.04 -39.30 -0.32 6.09 16 25 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 26 H 0.07 1.36 7.58 -51.93 -0.39 0.97 16 27 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.09 0.93 8.14 -51.92 -0.42 0.51 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 257.23 15.07 3.88 3.88 Total: -1.00 -28.94 257.23 -6.80 -35.74 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -5.11 Total: 2.78 kcal Atomic # 6 Polarization: -12.12 SS G_CDS: -0.22 Total: -12.33 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.05 Total: -40.16 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.38 Total: -6.44 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -28.94 -6.80 -35.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071013708.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.638 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds