Wall clock time and date at job start Mon Mar 30 2020 01:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 H 1.08997 * 109.52138 * 35.12360 * 13 12 2 15 15 C 1.53177 * 109.52279 * 155.31028 * 13 12 2 16 16 C 1.53180 * 109.03740 * 176.88511 * 15 13 12 17 17 C 1.53090 * 109.16291 * 303.02272 * 16 15 13 18 18 O 1.42910 * 109.41684 * 57.60696 * 17 16 15 19 19 C 1.42904 * 114.09434 * 298.84456 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 24 24 H 1.00900 * 110.99634 * 38.94573 * 12 2 1 25 25 H 1.09004 * 109.54408 * 296.75656 * 15 13 12 26 26 H 1.09002 * 109.53970 * 57.01936 * 15 13 12 27 27 H 1.08995 * 109.52051 * 183.11495 * 16 15 13 28 28 H 1.09001 * 109.57184 * 62.95797 * 16 15 13 29 29 H 1.09001 * 109.47845 * 297.62623 * 17 16 15 30 30 H 1.08999 * 109.49140 * 177.59542 * 17 16 15 31 31 H 1.08999 * 109.47986 * 301.17123 * 19 18 17 32 32 H 1.09001 * 109.47246 * 181.14150 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.2567 0.9319 2.2927 15 6 1.9849 -0.5802 3.6478 16 6 2.1296 0.3751 4.8365 17 6 3.4569 1.1286 4.7169 18 8 3.4952 1.8287 3.4716 19 6 3.4115 0.9819 2.3235 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7089 1.1613 -3.4844 24 1 1.4495 -1.4979 1.4101 25 1 1.0169 -1.0791 3.6967 26 1 2.7816 -1.3234 3.6782 27 1 2.1167 -0.1948 5.7654 28 1 1.3048 1.0877 4.8348 29 1 4.2830 0.4188 4.7604 30 1 3.5460 1.8408 5.5372 31 1 4.2371 0.2703 2.3357 32 1 3.4678 1.5886 1.4197 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071013727.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:12 Heat of formation + Delta-G solvation = -58.706284 kcal Electronic energy + Delta-G solvation = -13247.030032 eV Core-core repulsion = 11013.990368 eV Total energy + Delta-G solvation = -2233.039664 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.06911 -35.87610 -33.29823 -32.06406 -29.87088 -26.77046 -25.13786 -24.72977 -22.47948 -20.03043 -19.78770 -16.45284 -15.75041 -15.73854 -14.81586 -14.66990 -14.43774 -13.65737 -12.98106 -12.52039 -12.39287 -12.31072 -11.72202 -11.45607 -11.04158 -10.92558 -10.82696 -10.62986 -10.40278 -10.19462 -9.96502 -9.66634 -9.25508 -8.92705 -8.35350 -7.27254 -5.97415 -4.00976 3.33335 3.39751 3.44302 4.17247 4.45605 4.95777 5.04638 5.09033 5.30978 5.34282 5.48701 5.62923 5.73948 5.86129 6.00734 6.06255 6.18572 6.30300 6.53820 6.59840 6.69561 6.83659 7.11728 7.30276 7.56652 7.74849 7.90370 8.28226 8.52735 8.61621 9.06316 9.64452 11.09637 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.061107 B = 0.008215 C = 0.007992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.099547 B = 3407.485184 C = 3502.668837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.035 0.965 4 C -0.496 4.496 5 H 0.062 0.938 6 C 0.055 3.945 7 N -0.897 5.897 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.678 5.678 13 C 0.055 3.945 14 H 0.043 0.957 15 C -0.123 4.123 16 C -0.153 4.153 17 C 0.061 3.939 18 O -0.389 6.389 19 C 0.073 3.927 20 H 0.089 0.911 21 H 0.004 0.996 22 H 0.027 0.973 23 H 0.260 0.740 24 H 0.328 0.672 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.047 0.953 30 H 0.086 0.914 31 H 0.054 0.946 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.891 -1.117 11.597 11.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.102 3.898 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.310 5.310 13 C -0.056 4.056 14 H 0.061 0.939 15 C -0.161 4.161 16 C -0.191 4.191 17 C -0.017 4.017 18 O -0.307 6.307 19 C -0.004 4.004 20 H 0.108 0.892 21 H 0.023 0.977 22 H 0.046 0.954 23 H 0.069 0.931 24 H 0.145 0.855 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.065 0.935 30 H 0.104 0.896 31 H 0.072 0.928 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.511 -0.706 11.270 11.568 hybrid contribution -0.859 -0.651 -0.671 1.269 sum 1.652 -1.357 10.599 10.813 Atomic orbital electron populations 1.22431 1.00743 0.99136 1.00498 1.19239 0.89625 0.94443 0.86482 0.94740 1.21155 1.30266 1.12442 0.89595 0.91937 1.24959 0.95358 0.95190 0.99059 1.69888 1.37325 1.23128 1.23348 0.86507 0.79227 0.79224 0.82486 1.20868 1.21364 1.19881 1.60765 1.58228 1.08816 1.03142 1.22004 0.97461 0.95225 0.90880 0.93861 1.21786 1.02082 0.98026 0.94221 1.22180 0.99120 0.99197 0.98588 1.22503 0.96011 0.96049 0.87092 1.87918 1.94332 1.34469 1.13974 1.22624 0.96496 0.93748 0.87521 0.89230 0.97671 0.95379 0.93059 0.85468 0.92005 0.91290 0.91332 0.91343 0.93489 0.89564 0.92776 0.88530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.11 8.92 37.16 0.33 -3.78 16 2 C 0.21 5.29 2.39 -68.86 -0.16 5.12 16 3 H 0.03 0.96 7.14 -51.93 -0.37 0.59 16 4 C -0.50 -13.75 8.84 -34.44 -0.30 -14.06 16 5 H 0.06 1.74 7.81 -52.49 -0.41 1.33 16 6 C 0.05 1.53 5.30 -17.82 -0.09 1.43 16 7 N -0.90 -25.85 11.32 55.43 0.63 -25.22 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.68 -14.37 6.04 -100.80 -0.61 -14.98 16 13 C 0.06 1.02 2.50 -67.58 -0.17 0.85 16 14 H 0.04 0.87 7.12 -51.93 -0.37 0.50 16 15 C -0.12 -1.80 5.30 -26.55 -0.14 -1.94 16 16 C -0.15 -1.91 6.14 -26.59 -0.16 -2.07 16 17 C 0.06 0.79 6.84 37.20 0.25 1.05 16 18 O -0.39 -6.64 10.77 -35.23 -0.38 -7.01 16 19 C 0.07 1.34 6.32 37.20 0.24 1.57 16 20 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 21 H 0.00 0.10 7.43 -51.93 -0.39 -0.29 16 22 H 0.03 0.65 8.13 -51.93 -0.42 0.22 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.33 6.58 8.11 -39.29 -0.32 6.26 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 26 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.10 1.94 7.46 -51.93 -0.39 1.55 16 LS Contribution 256.11 15.07 3.86 3.86 Total: -1.00 -28.72 256.11 -6.81 -35.53 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.07 Total: 3.09 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -0.22 Total: -11.83 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: 0.02 Total: -40.20 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -0.38 Total: -7.01 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -28.72 -6.81 -35.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071013727.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.180 kcal (2) G-P(sol) polarization free energy of solvation -28.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds