Wall clock time and date at job start Mon Mar 30 2020 01:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 H 1.08997 * 109.52138 * 35.12360 * 13 12 2 15 15 C 1.53177 * 109.52279 * 155.31028 * 13 12 2 16 16 C 1.53180 * 109.03740 * 176.88511 * 15 13 12 17 17 C 1.53090 * 109.16291 * 303.02272 * 16 15 13 18 18 O 1.42910 * 109.41684 * 57.60696 * 17 16 15 19 19 C 1.42904 * 114.09434 * 298.84456 * 18 17 16 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 24 24 H 1.00900 * 110.99634 * 38.94573 * 12 2 1 25 25 H 1.09004 * 109.54408 * 296.75656 * 15 13 12 26 26 H 1.09002 * 109.53970 * 57.01936 * 15 13 12 27 27 H 1.08995 * 109.52051 * 183.11495 * 16 15 13 28 28 H 1.09001 * 109.57184 * 62.95797 * 16 15 13 29 29 H 1.09001 * 109.47845 * 297.62623 * 17 16 15 30 30 H 1.08999 * 109.49140 * 177.59542 * 17 16 15 31 31 H 1.08999 * 109.47986 * 301.17123 * 19 18 17 32 32 H 1.09001 * 109.47246 * 181.14150 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 1 1.2567 0.9319 2.2927 15 6 1.9849 -0.5802 3.6478 16 6 2.1296 0.3751 4.8365 17 6 3.4569 1.1286 4.7169 18 8 3.4952 1.8287 3.4716 19 6 3.4115 0.9819 2.3235 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7089 1.1613 -3.4844 24 1 1.4495 -1.4979 1.4101 25 1 1.0169 -1.0791 3.6967 26 1 2.7816 -1.3234 3.6782 27 1 2.1167 -0.1948 5.7654 28 1 1.3048 1.0877 4.8348 29 1 4.2830 0.4188 4.7604 30 1 3.5460 1.8408 5.5372 31 1 4.2371 0.2703 2.3357 32 1 3.4678 1.5886 1.4197 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071013727.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:12 Heat of formation + Delta-G solvation = -78.661790 kcal Electronic energy + Delta-G solvation = -13247.895368 eV Core-core repulsion = 11013.990368 eV Total energy + Delta-G solvation = -2233.905000 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.39518 -37.60240 -34.98820 -33.60060 -31.51738 -28.46112 -27.24889 -26.00589 -23.84791 -21.88090 -21.14135 -18.41029 -17.20147 -17.04374 -16.76962 -16.08445 -15.70707 -15.36116 -14.60379 -14.14787 -14.03180 -13.57942 -13.32905 -13.19021 -12.89368 -12.69626 -12.32726 -12.16577 -12.10264 -12.05840 -11.50356 -11.17138 -11.02610 -10.49048 -10.46758 -9.03158 -8.09967 -6.21586 1.43262 1.44091 1.55208 2.43789 2.91618 3.18574 3.59784 3.83721 3.96477 4.05230 4.28924 4.31192 4.54540 4.69648 4.73262 4.81270 4.86232 4.87659 4.98643 5.03919 5.11431 5.20132 5.29982 5.42791 5.67950 5.80784 6.21040 6.30830 6.63770 6.80895 6.93771 7.48613 8.95856 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.061107 B = 0.008215 C = 0.007992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.099547 B = 3407.485184 C = 3502.668837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.216 3.784 3 H 0.000 1.000 4 C -0.515 4.515 5 H 0.057 0.943 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.962 3.038 9 H -0.274 1.274 10 H -0.285 1.285 11 H -0.270 1.270 12 N -0.678 5.678 13 C 0.055 3.945 14 H 0.022 0.978 15 C -0.117 4.117 16 C -0.146 4.146 17 C 0.050 3.950 18 O -0.406 6.406 19 C 0.081 3.919 20 H 0.061 0.939 21 H 0.020 0.980 22 H 0.035 0.965 23 H 0.261 0.739 24 H 0.336 0.664 25 H 0.071 0.929 26 H 0.077 0.923 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.113 0.887 31 H 0.058 0.942 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.212 -2.244 12.879 13.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.107 3.893 3 H 0.018 0.982 4 C -0.554 4.554 5 H 0.075 0.925 6 C -0.191 4.191 7 N -0.564 5.564 8 Si 0.788 3.212 9 H -0.200 1.200 10 H -0.211 1.211 11 H -0.194 1.194 12 N -0.309 5.309 13 C -0.055 4.055 14 H 0.040 0.960 15 C -0.155 4.155 16 C -0.185 4.185 17 C -0.026 4.026 18 O -0.325 6.325 19 C 0.003 3.997 20 H 0.080 0.920 21 H 0.039 0.961 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.154 0.846 25 H 0.090 0.910 26 H 0.095 0.905 27 H 0.122 0.878 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.131 0.869 31 H 0.077 0.923 32 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.833 -1.842 12.578 13.024 hybrid contribution -0.943 -0.263 -0.985 1.389 sum 1.890 -2.105 11.593 11.933 Atomic orbital electron populations 1.22241 1.00119 0.99312 0.99880 1.18972 0.89966 0.92668 0.87697 0.98214 1.21455 1.30465 1.12498 0.90945 0.92463 1.25755 0.95478 0.95857 1.02026 1.70022 1.38128 1.24281 1.24004 0.85490 0.78831 0.78171 0.78716 1.20004 1.21082 1.19420 1.60614 1.57937 1.09285 1.03097 1.22045 0.96653 0.94929 0.91893 0.96016 1.21758 1.02978 0.98103 0.92660 1.22168 0.98469 0.98841 0.98973 1.22860 0.96889 0.97107 0.85751 1.87891 1.94465 1.35185 1.14952 1.22364 0.96629 0.93258 0.87415 0.91978 0.96067 0.94633 0.93013 0.84571 0.91042 0.90460 0.87844 0.91892 0.92185 0.86928 0.92330 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.67 8.92 71.98 0.64 -7.03 16 2 C 0.22 11.10 2.39 44.17 0.11 11.20 16 3 H 0.00 0.00 7.14 -2.39 -0.02 -0.02 16 4 C -0.52 -28.88 8.84 25.60 0.23 -28.65 16 5 H 0.06 3.20 7.81 -2.91 -0.02 3.18 16 6 C 0.01 0.38 5.30 84.65 0.45 0.83 16 7 N -0.92 -54.13 11.32 21.45 0.24 -53.89 16 8 Si 0.96 44.32 29.54 68.60 2.03 46.35 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 12 N -0.68 -28.65 6.04 -472.84 -2.86 -31.51 16 13 C 0.06 2.02 2.50 45.00 0.11 2.13 16 14 H 0.02 0.89 7.12 -2.39 -0.02 0.87 16 15 C -0.12 -3.14 5.30 30.71 0.16 -2.98 16 16 C -0.15 -3.19 6.14 30.68 0.19 -3.00 16 17 C 0.05 1.16 6.84 72.01 0.49 1.66 16 18 O -0.41 -13.53 10.77 -148.98 -1.60 -15.13 16 19 C 0.08 2.98 6.32 72.01 0.46 3.43 16 20 H 0.06 3.41 6.07 -2.39 -0.01 3.40 16 21 H 0.02 0.92 7.43 -2.39 -0.02 0.91 16 22 H 0.03 1.64 8.13 -2.38 -0.02 1.62 16 23 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 24 H 0.34 13.16 8.11 -89.69 -0.73 12.44 16 25 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 26 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.06 2.75 7.46 -2.39 -0.02 2.73 16 Total: -1.00 -61.81 256.11 1.00 -60.80 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.36 Total: 15.78 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 2.83 Total: -22.40 kcal Atomic # 7 Polarization: -82.79 SS G_CDS: -2.61 Total: -85.40 kcal Atomic # 8 Polarization: -13.53 SS G_CDS: -1.60 Total: -15.13 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -61.81 1.00 -60.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071013727.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.858 kcal (2) G-P(sol) polarization free energy of solvation -61.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds