Wall clock time and date at job start Mon Mar 30 2020 02:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99630 * 2 1 4 4 C 1.53001 * 109.46953 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46923 * 64.99975 * 4 3 2 6 6 C 1.46894 * 110.99880 * 180.02562 * 5 4 3 7 7 C 1.52999 * 109.47155 * 185.38213 * 6 5 4 8 8 C 1.50708 * 115.54730 * 294.80053 * 7 6 5 9 9 H 1.07994 * 120.00501 * 95.20134 * 8 7 6 10 10 C 1.37881 * 119.99823 * 274.92856 * 8 7 6 11 11 N 1.31521 * 119.99926 * 355.42157 * 10 8 7 12 12 Si 1.86801 * 120.00038 * 175.41588 * 10 8 7 13 13 H 1.48495 * 109.46929 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46745 * 120.00135 * 12 10 8 15 15 H 1.48498 * 109.47103 * 239.99813 * 12 10 8 16 16 C 1.52996 * 117.50305 * 80.46470 * 7 6 5 17 17 C 1.52994 * 117.50444 * 149.12972 * 7 6 5 18 18 H 1.08998 * 109.47406 * 60.00402 * 1 2 3 19 19 H 1.09000 * 109.46914 * 180.02562 * 1 2 3 20 20 H 1.08998 * 109.47239 * 300.00060 * 1 2 3 21 21 H 1.09003 * 109.47069 * 60.00087 * 3 2 1 22 22 H 1.09002 * 109.46880 * 300.00042 * 3 2 1 23 23 H 1.08996 * 109.47149 * 305.00362 * 4 3 2 24 24 H 1.09001 * 109.47006 * 184.99651 * 4 3 2 25 25 H 1.00901 * 110.99671 * 303.95463 * 5 4 3 26 26 H 1.08995 * 109.47366 * 65.38019 * 6 5 4 27 27 H 1.09006 * 109.46837 * 305.37455 * 6 5 4 28 28 H 0.96995 * 119.99832 * 185.00406 * 11 10 8 29 29 H 1.08999 * 117.50032 * 215.00249 * 16 7 6 30 30 H 1.09002 * 117.49839 * 0.02981 * 16 7 6 31 31 H 1.09004 * 117.49798 * 359.97366 * 17 7 6 32 32 H 1.09005 * 117.50278 * 144.97026 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9779 0.5623 -1.2544 6 6 5.4404 0.4294 -1.2890 7 6 5.8723 -0.0964 -2.6594 8 6 5.4149 -1.4930 -2.9933 9 1 4.5117 -1.6430 -3.5660 10 6 6.1528 -2.5792 -2.5726 11 7 7.3013 -2.3959 -1.9586 12 14 5.5210 -4.3110 -2.8746 13 1 4.2155 -4.2457 -3.5792 14 1 6.4973 -5.0552 -3.7102 15 1 5.3485 -5.0086 -1.5751 16 6 5.9604 0.9114 -3.8071 17 6 7.2394 0.3441 -3.1863 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3633 -1.0277 0.0005 20 1 -0.3633 0.5138 0.8900 21 1 1.6885 1.8464 0.8900 22 1 1.6885 1.8464 -0.8900 23 1 3.8508 0.5686 0.8426 24 1 3.9784 2.1767 0.0902 25 1 3.5304 -0.3315 -1.3920 26 1 5.7602 -0.2681 -0.5149 27 1 5.8980 1.4029 -1.1127 28 1 7.8547 -3.1582 -1.7274 29 1 5.6877 0.5643 -4.8037 30 1 5.7111 1.9492 -3.5858 31 1 7.8311 1.0089 -2.5568 32 1 7.8083 -0.3763 -3.7741 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083853485.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:11 Heat of formation + Delta-G solvation = -47.469918 kcal Electronic energy + Delta-G solvation = -12937.855994 eV Core-core repulsion = 10705.303576 eV Total energy + Delta-G solvation = -2232.552419 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.16821 -38.44343 -35.69967 -33.93207 -30.56976 -27.69537 -27.08438 -25.49551 -22.92342 -22.51973 -20.94061 -17.94894 -17.50087 -16.88960 -16.63417 -16.44134 -15.73613 -15.40631 -15.04324 -14.54025 -13.73561 -13.29600 -13.14597 -12.93114 -12.86164 -12.71001 -12.34372 -12.26913 -12.00198 -11.93765 -11.18156 -10.80956 -10.55309 -10.36020 -9.90486 -9.11816 -8.06703 -6.18612 1.39317 1.42582 1.53541 2.43971 2.97457 3.20483 3.32920 3.78180 4.17746 4.33948 4.40854 4.49259 4.57826 4.60312 4.68340 4.71811 4.82480 4.89567 4.91923 5.04317 5.07526 5.11354 5.32722 5.67317 5.72977 5.83062 6.29391 6.40108 6.49988 6.64872 6.90678 7.49289 9.00213 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.027272 B = 0.010918 C = 0.008585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1026.453310 B = 2563.979154 C = 3260.550582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.423 6.423 3 C 0.069 3.931 4 C 0.055 3.945 5 N -0.679 5.679 6 C 0.118 3.882 7 C 0.019 3.981 8 C -0.500 4.500 9 H 0.050 0.950 10 C 0.021 3.979 11 N -0.909 5.909 12 Si 0.948 3.052 13 H -0.267 1.267 14 H -0.282 1.282 15 H -0.284 1.284 16 C -0.178 4.178 17 C -0.161 4.161 18 H 0.048 0.952 19 H 0.088 0.912 20 H 0.056 0.944 21 H 0.075 0.925 22 H 0.060 0.940 23 H 0.018 0.982 24 H 0.095 0.905 25 H 0.342 0.658 26 H -0.003 1.003 27 H 0.053 0.947 28 H 0.258 0.742 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.831 6.464 4.067 12.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.343 6.343 3 C -0.007 4.007 4 C -0.075 4.075 5 N -0.310 5.310 6 C -0.011 4.011 7 C 0.019 3.981 8 C -0.538 4.538 9 H 0.068 0.932 10 C -0.178 4.178 11 N -0.548 5.548 12 Si 0.774 3.226 13 H -0.191 1.191 14 H -0.208 1.208 15 H -0.210 1.210 16 C -0.215 4.215 17 C -0.199 4.199 18 H 0.066 0.934 19 H 0.107 0.893 20 H 0.074 0.926 21 H 0.093 0.907 22 H 0.078 0.922 23 H 0.036 0.964 24 H 0.113 0.887 25 H 0.160 0.840 26 H 0.015 0.985 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.089 0.911 32 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.617 6.798 3.865 12.395 hybrid contribution 0.123 -1.647 0.478 1.719 sum -9.494 5.151 4.343 11.642 Atomic orbital electron populations 1.22873 0.79591 1.03418 1.00867 1.87882 1.21577 1.29260 1.95586 1.22623 0.92350 0.84436 1.01329 1.22108 0.94433 1.00155 0.90774 1.60505 1.06423 1.30172 1.33858 1.21209 0.87552 0.96360 0.96016 1.18927 0.95958 0.92591 0.90656 1.20728 1.08974 0.90255 1.33849 0.93182 1.25686 0.95197 1.02287 0.94654 1.70123 1.12052 1.31134 1.41449 0.85663 0.78679 0.80665 0.77610 1.19134 1.20776 1.20987 1.22844 1.02520 0.98054 0.98100 1.22406 0.91278 1.01912 1.04323 0.93375 0.89333 0.92577 0.90684 0.92168 0.96394 0.88654 0.84006 0.98522 0.92850 0.93317 0.91149 0.89431 0.91074 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 11.01 113.37 1.25 1.86 16 2 O -0.42 -13.03 10.22 -148.98 -1.52 -14.56 16 3 C 0.07 1.85 6.28 71.98 0.45 2.30 16 4 C 0.05 1.76 6.10 86.30 0.53 2.29 16 5 N -0.68 -27.67 6.47 -513.89 -3.33 -30.99 16 6 C 0.12 5.44 5.54 86.30 0.48 5.92 16 7 C 0.02 0.98 1.65 -52.93 -0.09 0.89 16 8 C -0.50 -27.89 8.33 25.60 0.21 -27.67 16 9 H 0.05 2.82 7.82 -2.91 -0.02 2.80 16 10 C 0.02 1.20 5.43 84.65 0.46 1.66 16 11 N -0.91 -53.09 12.65 21.45 0.27 -52.82 16 12 Si 0.95 44.56 29.54 68.60 2.03 46.59 16 13 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 14 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 15 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 16 C -0.18 -7.99 9.96 30.62 0.30 -7.69 16 17 C -0.16 -7.88 9.14 30.62 0.28 -7.60 16 18 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 19 H 0.09 1.74 8.14 -2.39 -0.02 1.73 16 20 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 21 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 22 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 24 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 25 H 0.34 15.44 7.86 -89.69 -0.71 14.73 16 26 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 27 H 0.05 2.25 8.08 -2.38 -0.02 2.23 16 28 H 0.26 14.39 8.32 -92.71 -0.77 13.61 16 29 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 30 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 31 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 32 H 0.06 3.05 8.14 -2.38 -0.02 3.03 16 Total: -1.00 -61.89 273.42 1.69 -60.19 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.37 Total: 19.62 kcal Atomic # 6 Polarization: -31.92 SS G_CDS: 3.87 Total: -28.04 kcal Atomic # 7 Polarization: -80.75 SS G_CDS: -3.05 Total: -83.81 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: -1.52 Total: -14.56 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -61.89 1.69 -60.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083853485.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.724 kcal (2) G-P(sol) polarization free energy of solvation -61.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds