Wall clock time and date at job start Mon Mar 30 2020 02:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.31192 * 125.45605 * 2 1 4 4 N 1.40021 * 109.16193 * 180.02562 * 3 2 1 5 5 C 1.46500 * 126.18893 * 180.02562 * 4 3 2 6 6 C 1.37532 * 107.61578 * 359.97438 * 4 3 2 7 7 C 1.40156 * 126.67738 * 179.97438 * 6 4 3 8 8 H 1.08004 * 119.99794 * 325.31708 * 7 6 4 9 9 C 1.40157 * 120.00453 * 145.32112 * 7 6 4 10 10 N 1.30774 * 120.00062 * 339.59553 * 9 7 6 11 11 Si 1.86798 * 120.00110 * 159.59221 * 9 7 6 12 12 H 1.48501 * 109.47445 * 90.00111 * 11 9 7 13 13 H 1.48504 * 109.47207 * 210.00054 * 11 9 7 14 14 H 1.48505 * 109.47149 * 329.99837 * 11 9 7 15 15 C 1.38848 * 125.45926 * 180.02562 * 2 1 3 16 16 Cl 1.73598 * 126.25400 * 0.24004 * 15 2 1 17 17 H 1.09004 * 109.46771 * 269.97580 * 1 2 3 18 18 H 1.08996 * 109.47159 * 29.97843 * 1 2 3 19 19 H 1.08995 * 109.46648 * 149.97645 * 1 2 3 20 20 H 1.09002 * 109.46862 * 269.99497 * 5 4 3 21 21 H 1.09002 * 109.47328 * 29.98930 * 5 4 3 22 22 H 1.08998 * 109.47032 * 150.00069 * 5 4 3 23 23 H 0.96995 * 120.00307 * 179.97438 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2681 1.0686 0.0000 4 7 3.6120 0.6758 -0.0006 5 6 4.7740 1.5680 -0.0003 6 6 3.6438 -0.6992 -0.0004 7 6 4.7868 -1.5102 -0.0013 8 1 5.6718 -1.1954 -0.5344 9 6 4.7815 -2.7297 0.6895 10 7 3.9074 -2.9394 1.6393 11 14 6.0231 -4.0555 0.2535 12 1 7.2460 -3.8788 1.0772 13 1 5.4345 -5.3923 0.5218 14 1 6.3757 -3.9497 -1.1852 15 6 2.3126 -1.1310 -0.0005 16 17 1.7679 -2.7793 -0.0071 17 1 -0.3633 -0.0004 1.0277 18 1 -0.3633 0.8901 -0.5135 19 1 -0.3632 -0.8898 -0.5142 20 1 5.0620 1.7898 -1.0279 21 1 4.5203 2.4949 0.5141 22 1 5.6043 1.0830 0.5130 23 1 3.9035 -3.7834 2.1171 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084270929.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:49 Heat of formation + Delta-G solvation = 30.496814 kcal Electronic energy + Delta-G solvation = -10893.120957 eV Core-core repulsion = 8767.566494 eV Total energy + Delta-G solvation = -2125.554463 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.97875 -36.47306 -35.56055 -34.15634 -30.93951 -29.98973 -27.00579 -25.70987 -21.79730 -20.14243 -18.73777 -17.27629 -16.36625 -15.85494 -14.94999 -14.80989 -14.22666 -13.88301 -13.62016 -13.29171 -13.02719 -12.83072 -12.74819 -12.31260 -12.04267 -11.87479 -11.59442 -10.79437 -10.62288 -9.55613 -8.70230 -8.46833 -6.50449 1.25488 1.44509 1.56581 1.64645 1.91538 2.23779 2.29964 2.77024 3.17719 4.10597 4.44644 4.57429 4.59331 4.74288 4.88463 5.06137 5.17986 5.29489 5.51134 5.80483 6.30857 6.35043 6.81360 7.07235 7.44782 8.39379 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.036317 B = 0.017234 C = 0.012375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.805717 B = 1624.348137 C = 2262.099295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.077 3.923 3 N -0.393 5.393 4 N -0.439 5.439 5 C 0.125 3.875 6 C 0.261 3.739 7 C -0.500 4.500 8 H 0.087 0.913 9 C 0.058 3.942 10 N -0.785 5.785 11 Si 0.976 3.024 12 H -0.259 1.259 13 H -0.271 1.271 14 H -0.260 1.260 15 C -0.288 4.288 16 Cl -0.074 7.074 17 H 0.075 0.925 18 H 0.077 0.923 19 H 0.075 0.925 20 H 0.064 0.936 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.618 0.071 -1.581 1.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.086 4.086 3 N -0.218 5.218 4 N -0.228 5.228 5 C -0.016 4.016 6 C 0.140 3.860 7 C -0.535 4.535 8 H 0.105 0.895 9 C -0.164 4.164 10 N -0.409 5.409 11 Si 0.797 3.203 12 H -0.183 1.183 13 H -0.196 1.196 14 H -0.184 1.184 15 C -0.327 4.327 16 Cl -0.046 7.046 17 H 0.093 0.907 18 H 0.096 0.904 19 H 0.094 0.906 20 H 0.083 0.917 21 H 0.102 0.898 22 H 0.100 0.900 23 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.562 1.207 -1.400 1.932 hybrid contribution 0.474 -1.530 0.006 1.602 sum 1.036 -0.324 -1.395 1.767 Atomic orbital electron populations 1.20096 0.85822 1.02995 1.02732 1.22131 0.97524 0.89779 0.99173 1.76762 0.87510 1.22660 1.34822 1.48775 1.04428 1.04670 1.64891 1.21531 0.84723 0.93100 1.02272 1.18666 0.94342 0.82217 0.90774 1.18662 0.98736 1.03669 1.32457 0.89533 1.26378 0.97818 0.99834 0.92339 1.69924 1.31408 1.25267 1.14314 0.85290 0.78221 0.76871 0.79954 1.18322 1.19570 1.18385 1.20506 0.92505 0.84312 1.35371 1.98099 1.89011 1.19587 1.97952 0.90664 0.90382 0.90609 0.91741 0.89817 0.89961 0.90136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.19 10.28 71.24 0.73 -1.45 14 2 C 0.08 3.80 7.15 42.80 0.31 4.11 14 3 N -0.39 -20.05 12.53 -47.84 -0.60 -20.65 14 4 N -0.44 -22.06 4.09 -360.64 -1.48 -23.54 14 5 C 0.12 4.76 11.31 127.77 1.44 6.20 14 6 C 0.26 14.19 6.36 39.13 0.25 14.43 14 7 C -0.50 -26.00 8.71 23.20 0.20 -25.79 14 8 H 0.09 4.24 7.93 -2.91 -0.02 4.22 14 9 C 0.06 2.85 4.65 85.32 0.40 3.25 14 10 N -0.79 -40.38 10.60 21.87 0.23 -40.15 14 11 Si 0.98 37.53 29.61 68.60 2.03 39.56 14 12 H -0.26 -9.36 7.11 99.48 0.71 -8.65 14 13 H -0.27 -10.17 7.11 99.48 0.71 -9.46 14 14 H -0.26 -9.89 7.11 99.48 0.71 -9.19 14 15 C -0.29 -15.38 6.30 22.83 0.14 -15.23 14 16 Cl -0.07 -3.64 25.71 -2.72 -0.07 -3.71 14 17 H 0.07 2.64 8.14 -2.38 -0.02 2.62 14 18 H 0.08 2.60 8.14 -2.39 -0.02 2.58 14 19 H 0.08 2.68 7.94 -2.39 -0.02 2.66 14 20 H 0.06 2.18 8.14 -2.39 -0.02 2.16 14 21 H 0.08 2.82 8.14 -2.39 -0.02 2.81 14 22 H 0.08 2.99 7.84 -2.39 -0.02 2.97 14 23 H 0.29 13.58 8.29 -92.71 -0.77 12.81 14 Total: -1.00 -62.26 223.20 4.81 -57.46 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: 1.21 Total: 5.52 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 3.47 Total: -14.49 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -1.84 Total: -84.34 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Atomic # 17 Polarization: -3.64 SS G_CDS: -0.07 Total: -3.71 kcal Total: -62.26 4.81 -57.46 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084270929.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.954 kcal (2) G-P(sol) polarization free energy of solvation -62.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds