Wall clock time and date at job start Mon Mar 30 2020 02:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00150 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 C 1.50698 * 109.47178 * 240.00135 * 2 1 3 13 13 C 1.34488 * 125.78204 * 119.71673 * 12 2 1 14 14 C 1.41411 * 106.85511 * 179.91108 * 13 12 2 15 15 C 1.34652 * 106.82554 * 0.34767 * 14 13 12 16 16 Cl 1.73602 * 125.79751 * 179.80610 * 15 14 13 17 17 O 1.34300 * 108.40073 * 359.78910 * 15 14 13 18 18 H 1.09007 * 109.46899 * 60.00345 * 1 2 3 19 19 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47084 * 300.00697 * 1 2 3 21 21 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 22 22 H 1.08002 * 126.57260 * 0.03371 * 13 12 2 23 23 H 1.08004 * 126.58648 * 180.13819 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6495 -1.5910 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9476 0.8331 2.6034 8 14 2.3156 -1.1244 4.0079 9 1 3.1356 -2.2945 3.6038 10 1 3.1433 -0.1956 4.8187 11 1 1.1572 -1.5869 4.8138 12 6 2.0323 -0.7104 -1.2305 13 6 2.8044 -0.1703 -2.1901 14 6 3.0376 -1.1843 -3.1478 15 6 2.3868 -2.2824 -2.7190 16 17 2.3406 -3.8168 -3.5299 17 8 1.7799 -1.9891 -1.5575 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 0.7136 1.1647 3.4844 22 1 3.1767 0.8430 -2.2222 23 1 3.6223 -1.0942 -4.0513 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084331771.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:14 Heat of formation + Delta-G solvation = -0.298588 kcal Electronic energy + Delta-G solvation = -10613.474283 eV Core-core repulsion = 8454.291680 eV Total energy + Delta-G solvation = -2159.182603 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.034 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -41.92784 -36.59308 -34.49532 -32.44078 -31.07464 -27.43994 -25.24783 -21.98912 -21.26569 -19.50189 -17.10331 -16.32773 -15.43976 -14.87407 -13.68288 -13.13556 -12.79882 -12.56785 -12.26939 -11.84119 -11.49153 -11.07750 -10.98542 -10.89463 -10.40460 -10.29779 -9.83429 -9.39130 -9.14094 -8.51154 -7.60977 -6.13311 -4.21058 1.70931 2.25265 3.18858 3.25266 3.33473 3.39733 4.21802 4.36300 5.18434 5.46648 5.66119 6.18606 6.35687 6.53645 6.68238 6.89652 6.92499 7.10997 7.40421 7.64111 7.86302 7.92934 8.19670 8.80054 9.44442 10.92359 Molecular weight = 200.03amu Principal moments of inertia in cm(-1) A = 0.048917 B = 0.009612 C = 0.008797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.262411 B = 2912.201360 C = 3182.161507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.107 3.893 3 H 0.065 0.935 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 C 0.086 3.914 13 C -0.254 4.254 14 C -0.168 4.168 15 C -0.014 4.014 16 Cl -0.003 7.003 17 O -0.162 6.162 18 H 0.014 0.986 19 H 0.033 0.967 20 H 0.093 0.907 21 H 0.263 0.737 22 H 0.149 0.851 23 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.969 -3.474 -8.377 9.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.089 3.911 3 H 0.083 0.917 4 C -0.554 4.554 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.208 1.208 12 C 0.035 3.965 13 C -0.273 4.273 14 C -0.189 4.189 15 C -0.090 4.090 16 Cl 0.025 6.975 17 O -0.059 6.059 18 H 0.033 0.967 19 H 0.052 0.948 20 H 0.111 0.889 21 H 0.073 0.927 22 H 0.166 0.834 23 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.709 -3.707 -8.147 9.112 hybrid contribution 0.444 -0.608 0.575 0.947 sum 2.153 -4.315 -7.572 8.977 Atomic orbital electron populations 1.21816 0.96747 1.00075 1.00938 1.17811 0.93609 0.94431 0.85268 0.91741 1.21048 1.32079 1.12672 0.89594 0.92131 1.24933 0.94766 0.94958 0.99082 1.69873 1.36460 1.22572 1.23792 0.86409 0.78703 0.79748 0.82489 1.19636 1.20813 1.20818 1.23947 0.95878 0.79170 0.97551 1.21466 1.08003 1.01217 0.96652 1.21352 1.03894 0.91532 1.02114 1.22163 1.06189 0.89890 0.90745 1.98357 1.97824 1.27455 1.73866 1.84010 1.58983 1.30120 1.32765 0.96682 0.94774 0.88878 0.92664 0.83351 0.83499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.95 37.16 0.33 -2.97 14 2 C 0.11 2.66 2.70 -92.93 -0.25 2.41 14 3 H 0.06 1.64 8.10 -51.93 -0.42 1.22 14 4 C -0.52 -14.08 8.55 -34.44 -0.29 -14.37 14 5 H 0.06 1.69 7.74 -52.49 -0.41 1.28 14 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 14 7 N -0.89 -24.47 11.33 55.43 0.63 -23.84 14 8 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 14 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 14 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 14 11 H -0.28 -6.55 7.11 56.52 0.40 -6.15 14 12 C 0.09 1.94 5.76 -35.63 -0.21 1.74 14 13 C -0.25 -4.97 10.78 -39.70 -0.43 -5.40 14 14 C -0.17 -2.97 10.88 -39.64 -0.43 -3.40 14 15 C -0.01 -0.27 7.93 29.46 0.23 -0.04 14 16 Cl 0.00 -0.05 29.30 -51.86 -1.52 -1.57 14 17 O -0.16 -3.63 10.65 5.51 0.06 -3.57 14 18 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 14 19 H 0.03 0.81 8.14 -51.93 -0.42 0.38 14 20 H 0.09 2.39 6.08 -51.93 -0.32 2.07 14 21 H 0.26 6.88 8.31 -40.82 -0.34 6.54 14 22 H 0.15 2.57 8.06 -52.49 -0.42 2.15 14 23 H 0.15 2.08 8.06 -52.48 -0.42 1.66 14 LS Contribution 225.64 15.07 3.40 3.40 Total: -1.00 -27.44 225.64 -5.56 -33.00 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: -1.97 Total: -3.04 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -1.14 Total: -20.39 kcal Atomic # 7 Polarization: -24.47 SS G_CDS: 0.63 Total: -23.84 kcal Atomic # 8 Polarization: -3.63 SS G_CDS: 0.06 Total: -3.57 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.52 Total: -1.57 kcal Total LS contribution 3.40 Total: 3.40 kcal Total: -27.44 -5.56 -33.00 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084331771.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.700 kcal (2) G-P(sol) polarization free energy of solvation -27.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds