Wall clock time and date at job start Mon Mar 30 2020 02:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47339 * 2 1 4 4 C 1.50697 * 109.47299 * 120.00150 * 2 1 3 5 5 H 1.07991 * 120.00449 * 119.72229 * 4 2 1 6 6 C 1.37885 * 119.99686 * 300.00060 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 C 1.50698 * 109.47178 * 240.00135 * 2 1 3 13 13 C 1.34488 * 125.78204 * 119.71673 * 12 2 1 14 14 C 1.41411 * 106.85511 * 179.91108 * 13 12 2 15 15 C 1.34652 * 106.82554 * 0.34767 * 14 13 12 16 16 Cl 1.73602 * 125.79751 * 179.80610 * 15 14 13 17 17 O 1.34300 * 108.40073 * 359.78910 * 15 14 13 18 18 H 1.09007 * 109.46899 * 60.00345 * 1 2 3 19 19 H 1.08993 * 109.47037 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.47084 * 300.00697 * 1 2 3 21 21 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 22 22 H 1.08002 * 126.57260 * 0.03371 * 13 12 2 23 23 H 1.08004 * 126.58648 * 180.13819 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6495 -1.5910 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9476 0.8331 2.6034 8 14 2.3156 -1.1244 4.0079 9 1 3.1356 -2.2945 3.6038 10 1 3.1433 -0.1956 4.8187 11 1 1.1572 -1.5869 4.8138 12 6 2.0323 -0.7104 -1.2305 13 6 2.8044 -0.1703 -2.1901 14 6 3.0376 -1.1843 -3.1478 15 6 2.3868 -2.2824 -2.7190 16 17 2.3406 -3.8168 -3.5299 17 8 1.7799 -1.9891 -1.5575 18 1 -0.3633 0.5138 -0.8901 19 1 -0.3633 -1.0276 -0.0005 20 1 -0.3633 0.5139 0.8899 21 1 0.7136 1.1647 3.4844 22 1 3.1767 0.8430 -2.2222 23 1 3.6223 -1.0942 -4.0513 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084331771.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:14 Heat of formation + Delta-G solvation = -15.286705 kcal Electronic energy + Delta-G solvation = -10614.124217 eV Core-core repulsion = 8454.291680 eV Total energy + Delta-G solvation = -2159.832536 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.034 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.49360 -37.92617 -36.43354 -34.01515 -32.99186 -29.08319 -27.29804 -23.77614 -22.79546 -21.15712 -18.76199 -18.20795 -17.08444 -16.77392 -15.40031 -14.95080 -14.35928 -14.25423 -13.75631 -13.45704 -13.17959 -12.90148 -12.77119 -12.44425 -12.27686 -12.20429 -11.69709 -11.19626 -10.80810 -10.56168 -9.17687 -8.17770 -6.32919 0.30188 0.71621 1.39868 1.42227 1.53501 1.68037 2.40907 2.65652 3.10582 4.06322 4.12044 4.68377 4.74804 4.86206 4.93283 5.05433 5.13471 5.39814 5.56857 5.66697 5.91997 6.09372 6.29801 6.71105 7.35375 8.86691 Molecular weight = 200.03amu Principal moments of inertia in cm(-1) A = 0.048917 B = 0.009612 C = 0.008797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 572.262411 B = 2912.201360 C = 3182.161507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.106 3.894 3 H 0.052 0.948 4 C -0.536 4.536 5 H 0.045 0.955 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.958 3.042 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.044 3.956 13 C -0.240 4.240 14 C -0.158 4.158 15 C -0.024 4.024 16 Cl 0.027 6.973 17 O -0.189 6.189 18 H 0.035 0.965 19 H 0.024 0.976 20 H 0.072 0.928 21 H 0.267 0.733 22 H 0.169 0.831 23 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.749 -3.902 -9.271 10.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.088 3.912 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.063 0.937 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.783 3.217 9 H -0.199 1.199 10 H -0.199 1.199 11 H -0.202 1.202 12 C -0.006 4.006 13 C -0.259 4.259 14 C -0.178 4.178 15 C -0.100 4.100 16 Cl 0.055 6.945 17 O -0.087 6.087 18 H 0.054 0.946 19 H 0.043 0.957 20 H 0.091 0.909 21 H 0.077 0.923 22 H 0.186 0.814 23 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.489 -4.131 -9.050 10.255 hybrid contribution 0.215 -0.530 0.748 0.942 sum 2.704 -4.661 -8.303 9.898 Atomic orbital electron populations 1.21656 0.96590 0.99362 1.00891 1.17585 0.93820 0.93890 0.85954 0.93059 1.21247 1.32362 1.12551 0.91230 0.93690 1.25637 0.94888 0.95635 1.01591 1.69960 1.36919 1.23372 1.24564 0.85504 0.78304 0.78650 0.79230 1.19892 1.19867 1.20228 1.23549 0.98803 0.79982 0.98306 1.21817 1.05870 1.02399 0.95787 1.21767 1.03277 0.90070 1.02702 1.22725 1.05618 0.91734 0.89874 1.98367 1.97686 1.25550 1.72861 1.83939 1.60106 1.30198 1.34487 0.94573 0.95674 0.90904 0.92349 0.81360 0.79537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.18 8.95 71.98 0.64 -5.53 14 2 C 0.11 5.34 2.70 -12.29 -0.03 5.31 14 3 H 0.05 2.67 8.10 -2.39 -0.02 2.65 14 4 C -0.54 -29.77 8.55 25.60 0.22 -29.55 14 5 H 0.04 2.57 7.74 -2.92 -0.02 2.54 14 6 C 0.02 1.22 5.30 84.66 0.45 1.67 14 7 N -0.91 -50.50 11.33 21.45 0.24 -50.26 14 8 Si 0.96 43.24 29.54 68.60 2.03 45.26 14 9 H -0.27 -12.37 7.11 99.48 0.71 -11.66 14 10 H -0.27 -11.88 7.11 99.48 0.71 -11.17 14 11 H -0.28 -12.17 7.11 99.48 0.71 -11.47 14 12 C 0.04 1.99 5.76 24.83 0.14 2.13 14 13 C -0.24 -8.94 10.78 22.19 0.24 -8.70 14 14 C -0.16 -5.11 10.88 22.23 0.24 -4.87 14 15 C -0.02 -0.88 7.93 67.00 0.53 -0.35 14 16 Cl 0.03 0.76 29.30 -2.72 -0.08 0.68 14 17 O -0.19 -8.42 10.65 -3.19 -0.03 -8.46 14 18 H 0.04 1.53 8.14 -2.38 -0.02 1.51 14 19 H 0.02 1.20 8.14 -2.39 -0.02 1.18 14 20 H 0.07 3.80 6.08 -2.39 -0.01 3.79 14 21 H 0.27 13.96 8.31 -92.71 -0.77 13.19 14 22 H 0.17 5.44 8.06 -2.91 -0.02 5.42 14 23 H 0.19 4.42 8.06 -2.91 -0.02 4.39 14 Total: -1.00 -58.07 225.64 5.80 -52.28 By element: Atomic # 1 Polarization: -0.83 SS G_CDS: 1.21 Total: 0.38 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 2.43 Total: -39.89 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.24 Total: -50.26 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.03 Total: -8.46 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 17 Polarization: 0.76 SS G_CDS: -0.08 Total: 0.68 kcal Total: -58.07 5.80 -52.28 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084331771.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.988 kcal (2) G-P(sol) polarization free energy of solvation -58.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds