Wall clock time and date at job start Mon Mar 30 2020 02:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39857 * 125.89588 * 2 1 4 4 C 1.35465 * 107.90084 * 179.69905 * 3 2 1 5 5 Cl 1.73605 * 126.14246 * 180.28009 * 4 3 2 6 6 N 1.34987 * 107.71635 * 0.42408 * 4 3 2 7 7 C 1.46491 * 126.03540 * 179.84016 * 6 4 3 8 8 C 1.50702 * 109.46957 * 269.71262 * 7 6 4 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 N 1.30843 * 125.88584 * 179.97438 * 2 1 3 17 17 H 1.08998 * 109.47222 * 270.02253 * 1 2 3 18 18 H 1.09008 * 109.46701 * 30.01996 * 1 2 3 19 19 H 1.08996 * 109.47437 * 150.01523 * 1 2 3 20 20 H 1.08004 * 126.04927 * 359.94046 * 3 2 1 21 21 H 1.09004 * 109.47166 * 149.71528 * 7 6 4 22 22 H 1.08994 * 109.47507 * 29.71235 * 7 6 4 23 23 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1330 0.0000 4 6 3.6153 0.7145 0.0068 5 17 5.0222 1.7315 0.0165 6 7 3.6088 -0.6354 0.0014 7 6 4.7892 -1.5029 0.0024 8 6 5.1951 -1.8004 -1.4181 9 1 4.6305 -1.3846 -2.2395 10 6 6.2911 -2.5986 -1.6692 11 7 6.9788 -3.1047 -0.6690 12 14 6.7987 -2.9611 -3.4299 13 1 5.8683 -2.2778 -4.3640 14 1 8.1804 -2.4670 -3.6585 15 1 6.7514 -4.4263 -3.6671 16 7 2.2739 -1.0601 0.0005 17 1 -0.3633 0.0004 1.0276 18 1 -0.3633 0.8899 -0.5142 19 1 -0.3634 -0.8901 -0.5136 20 1 1.9922 2.1598 -0.0009 21 1 4.5546 -2.4352 0.5161 22 1 5.6086 -1.0010 0.5168 23 1 7.7497 -3.6665 -0.8457 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085018890.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:51 Heat of formation + Delta-G solvation = 55.993062 kcal Electronic energy + Delta-G solvation = -10510.416719 eV Core-core repulsion = 8385.967856 eV Total energy + Delta-G solvation = -2124.448863 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -40.49479 -36.21662 -33.97650 -32.24596 -29.55821 -28.75107 -26.07174 -22.86881 -20.38212 -19.35472 -16.81914 -16.22108 -14.60511 -14.48451 -13.96043 -13.36737 -12.88627 -12.65252 -12.22434 -11.97624 -11.56278 -11.32685 -11.01127 -10.89126 -10.81534 -10.27315 -9.87302 -9.78847 -8.66149 -8.37790 -7.88347 -6.27704 -4.34728 2.19233 2.47887 3.20107 3.20884 3.27670 3.33109 3.61128 4.29320 5.05241 5.17571 5.49472 5.87556 5.95300 6.07200 6.12925 6.38869 6.85258 6.96297 7.27017 7.56865 7.76172 7.84025 8.38894 8.70041 9.31256 10.80622 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.037002 B = 0.011312 C = 0.009766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.535988 B = 2474.666993 C = 2866.305016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.048 3.952 3 C -0.276 4.276 4 C 0.132 3.868 5 Cl -0.018 7.018 6 N -0.318 5.318 7 C 0.251 3.749 8 C -0.535 4.535 9 H 0.065 0.935 10 C 0.066 3.934 11 N -0.890 5.890 12 Si 0.907 3.093 13 H -0.271 1.271 14 H -0.280 1.280 15 H -0.280 1.280 16 N -0.275 5.275 17 H 0.070 0.930 18 H 0.072 0.928 19 H 0.069 0.931 20 H 0.145 0.855 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.676 7.494 1.315 10.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.115 4.115 3 C -0.308 4.308 4 C -0.026 4.026 5 Cl 0.010 6.990 6 N -0.100 5.100 7 C 0.134 3.866 8 C -0.573 4.573 9 H 0.083 0.917 10 C -0.137 4.137 11 N -0.528 5.528 12 Si 0.734 3.266 13 H -0.195 1.195 14 H -0.206 1.206 15 H -0.206 1.206 16 N -0.102 5.102 17 H 0.089 0.911 18 H 0.090 0.910 19 H 0.088 0.912 20 H 0.162 0.838 21 H 0.075 0.925 22 H 0.075 0.925 23 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -6.206 6.083 1.366 8.797 hybrid contribution 0.712 0.724 -0.913 1.365 sum -5.494 6.806 0.453 8.759 Atomic orbital electron populations 1.20052 0.87094 1.02761 1.02310 1.22052 0.96697 0.90611 1.02172 1.20770 0.89394 0.99869 1.20729 1.21657 0.89623 0.84969 1.06323 1.98357 1.39513 1.64053 1.97087 1.49632 1.06613 1.03053 1.50673 1.19853 0.77681 0.89587 0.99518 1.21277 1.13096 1.31963 0.90993 0.91663 1.24920 0.95590 0.94972 0.98242 1.69931 1.18910 1.32980 1.30982 0.86278 0.78482 0.78239 0.83571 1.19521 1.20597 1.20588 1.77455 0.86429 1.22001 1.24268 0.91108 0.90953 0.91203 0.83764 0.92527 0.92541 0.92255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.84 10.45 36.00 0.38 -0.46 14 2 C 0.05 0.91 7.22 -82.41 -0.59 0.31 14 3 C -0.28 -5.09 10.72 -39.97 -0.43 -5.52 14 4 C 0.13 2.77 7.46 -17.15 -0.13 2.64 14 5 Cl -0.02 -0.34 28.76 -51.86 -1.49 -1.83 14 6 N -0.32 -7.59 3.60 -59.33 -0.21 -7.80 14 7 C 0.25 6.57 6.04 -5.20 -0.03 6.53 14 8 C -0.53 -14.96 9.39 -34.44 -0.32 -15.28 14 9 H 0.07 1.88 7.81 -52.49 -0.41 1.47 14 10 C 0.07 1.83 5.46 -17.82 -0.10 1.73 14 11 N -0.89 -25.31 13.29 55.43 0.74 -24.58 14 12 Si 0.91 21.36 29.54 -169.99 -5.02 16.33 14 13 H -0.27 -6.37 7.11 56.52 0.40 -5.97 14 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 14 15 H -0.28 -6.50 7.11 56.52 0.40 -6.09 14 16 N -0.28 -6.28 12.57 33.67 0.42 -5.86 14 17 H 0.07 0.81 8.14 -51.93 -0.42 0.39 14 18 H 0.07 0.78 8.14 -51.92 -0.42 0.36 14 19 H 0.07 0.90 8.14 -51.93 -0.42 0.48 14 20 H 0.14 2.17 8.06 -52.48 -0.42 1.75 14 21 H 0.06 1.56 8.14 -51.93 -0.42 1.14 14 22 H 0.06 1.49 7.79 -51.93 -0.40 1.09 14 23 H 0.27 7.14 8.31 -40.82 -0.34 6.80 14 LS Contribution 230.33 15.07 3.47 3.47 Total: -1.00 -29.57 230.33 -5.38 -34.95 By element: Atomic # 1 Polarization: -2.58 SS G_CDS: -2.06 Total: -4.64 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -1.23 Total: -10.05 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.95 Total: -38.24 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.49 Total: -1.83 kcal Total LS contribution 3.47 Total: 3.47 kcal Total: -29.57 -5.38 -34.95 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085018890.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.943 kcal (2) G-P(sol) polarization free energy of solvation -29.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds