Wall clock time and date at job start Mon Mar 30 2020 02:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39857 * 125.89588 * 2 1 4 4 C 1.35465 * 107.90084 * 179.69905 * 3 2 1 5 5 Cl 1.73605 * 126.14246 * 180.28009 * 4 3 2 6 6 N 1.34987 * 107.71635 * 0.42408 * 4 3 2 7 7 C 1.46491 * 126.03540 * 179.84016 * 6 4 3 8 8 C 1.50702 * 109.46957 * 269.71262 * 7 6 4 9 9 H 1.08002 * 120.00299 * 0.02562 * 8 7 6 10 10 C 1.37884 * 119.99942 * 179.72213 * 8 7 6 11 11 N 1.31514 * 119.99698 * 0.28408 * 10 8 7 12 12 Si 1.86794 * 119.99837 * 180.27476 * 10 8 7 13 13 H 1.48496 * 109.47341 * 0.02562 * 12 10 8 14 14 H 1.48508 * 109.46983 * 120.00379 * 12 10 8 15 15 H 1.48503 * 109.47491 * 240.00192 * 12 10 8 16 16 N 1.30843 * 125.88584 * 179.97438 * 2 1 3 17 17 H 1.08998 * 109.47222 * 270.02253 * 1 2 3 18 18 H 1.09008 * 109.46701 * 30.01996 * 1 2 3 19 19 H 1.08996 * 109.47437 * 150.01523 * 1 2 3 20 20 H 1.08004 * 126.04927 * 359.94046 * 3 2 1 21 21 H 1.09004 * 109.47166 * 149.71528 * 7 6 4 22 22 H 1.08994 * 109.47507 * 29.71235 * 7 6 4 23 23 H 0.97005 * 119.99651 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3270 1.1330 0.0000 4 6 3.6153 0.7145 0.0068 5 17 5.0222 1.7315 0.0165 6 7 3.6088 -0.6354 0.0014 7 6 4.7892 -1.5029 0.0024 8 6 5.1951 -1.8004 -1.4181 9 1 4.6305 -1.3846 -2.2395 10 6 6.2911 -2.5986 -1.6692 11 7 6.9788 -3.1047 -0.6690 12 14 6.7987 -2.9611 -3.4299 13 1 5.8683 -2.2778 -4.3640 14 1 8.1804 -2.4670 -3.6585 15 1 6.7514 -4.4263 -3.6671 16 7 2.2739 -1.0601 0.0005 17 1 -0.3633 0.0004 1.0276 18 1 -0.3633 0.8899 -0.5142 19 1 -0.3634 -0.8901 -0.5136 20 1 1.9922 2.1598 -0.0009 21 1 4.5546 -2.4352 0.5161 22 1 5.6086 -1.0010 0.5168 23 1 7.7497 -3.6665 -0.8457 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085018890.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:51 Heat of formation + Delta-G solvation = 37.394869 kcal Electronic energy + Delta-G solvation = -10511.223197 eV Core-core repulsion = 8385.967856 eV Total energy + Delta-G solvation = -2125.255341 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.08630 -37.74779 -35.90194 -34.03723 -31.16133 -30.33089 -27.83035 -24.77558 -22.01417 -20.88281 -18.89935 -17.98312 -16.48931 -16.13268 -15.52162 -14.95687 -14.50095 -14.09761 -13.75282 -13.48380 -13.14086 -13.04174 -12.71800 -12.65055 -12.49492 -12.20531 -11.75293 -11.40919 -10.77127 -10.03665 -9.49531 -8.37629 -6.54256 0.62574 0.86052 1.35442 1.36274 1.49335 1.76356 1.90547 2.32710 2.93582 3.73563 4.20258 4.52096 4.68963 4.81608 4.85741 4.92281 5.08422 5.26129 5.47284 5.74527 5.81022 5.92487 6.53521 6.81000 7.16287 8.70452 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.037002 B = 0.011312 C = 0.009766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.535988 B = 2474.666993 C = 2866.305016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.057 3.943 3 C -0.264 4.264 4 C 0.112 3.888 5 Cl -0.005 7.005 6 N -0.350 5.350 7 C 0.269 3.731 8 C -0.552 4.552 9 H 0.050 0.950 10 C 0.021 3.979 11 N -0.918 5.918 12 Si 0.974 3.026 13 H -0.272 1.272 14 H -0.268 1.268 15 H -0.272 1.272 16 N -0.322 5.322 17 H 0.093 0.907 18 H 0.104 0.896 19 H 0.070 0.930 20 H 0.184 0.816 21 H 0.029 0.971 22 H 0.046 0.954 23 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.720 8.599 0.512 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C -0.294 4.294 4 C -0.044 4.044 5 Cl 0.023 6.977 6 N -0.133 5.133 7 C 0.150 3.850 8 C -0.590 4.590 9 H 0.069 0.931 10 C -0.180 4.180 11 N -0.556 5.556 12 Si 0.797 3.203 13 H -0.196 1.196 14 H -0.193 1.193 15 H -0.197 1.197 16 N -0.148 5.148 17 H 0.112 0.888 18 H 0.123 0.877 19 H 0.089 0.911 20 H 0.202 0.798 21 H 0.047 0.953 22 H 0.064 0.936 23 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.256 7.206 0.574 10.243 hybrid contribution 0.943 0.463 -0.610 1.215 sum -6.313 7.669 -0.036 9.933 Atomic orbital electron populations 1.20304 0.82989 1.04440 1.04283 1.23046 0.99032 0.89633 0.98978 1.21306 0.88081 1.01601 1.18424 1.22160 0.91271 0.84289 1.06631 1.98353 1.39104 1.63234 1.97042 1.49368 1.06430 1.03840 1.53649 1.19306 0.78611 0.88855 0.98247 1.21396 1.13539 1.32633 0.91407 0.93126 1.25772 0.95317 0.94422 1.02462 1.70015 1.19304 1.33258 1.33026 0.85273 0.78382 0.78321 0.78320 1.19606 1.19302 1.19693 1.77410 0.86409 1.24363 1.26636 0.88837 0.87707 0.91088 0.79828 0.95341 0.93623 0.91681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.41 10.45 71.23 0.74 -0.67 14 2 C 0.06 2.04 7.22 43.10 0.31 2.36 14 3 C -0.26 -9.07 10.72 22.02 0.24 -8.83 14 4 C 0.11 4.65 7.46 83.57 0.62 5.27 14 5 Cl -0.01 -0.19 28.76 -2.72 -0.08 -0.27 14 6 N -0.35 -17.02 3.60 -341.61 -1.23 -18.25 14 7 C 0.27 14.61 6.04 85.64 0.52 15.12 14 8 C -0.55 -31.57 9.39 25.60 0.24 -31.33 14 9 H 0.05 2.98 7.81 -2.91 -0.02 2.96 14 10 C 0.02 1.19 5.46 84.66 0.46 1.65 14 11 N -0.92 -52.82 13.29 21.45 0.28 -52.53 14 12 Si 0.97 43.71 29.54 68.60 2.03 45.73 14 13 H -0.27 -12.12 7.11 99.48 0.71 -11.42 14 14 H -0.27 -11.46 7.11 99.48 0.71 -10.75 14 15 H -0.27 -11.78 7.11 99.48 0.71 -11.07 14 16 N -0.32 -14.75 12.57 -47.39 -0.60 -15.34 14 17 H 0.09 1.78 8.14 -2.39 -0.02 1.76 14 18 H 0.10 1.75 8.14 -2.38 -0.02 1.73 14 19 H 0.07 1.64 8.14 -2.39 -0.02 1.62 14 20 H 0.18 4.72 8.06 -2.91 -0.02 4.70 14 21 H 0.03 1.66 8.14 -2.38 -0.02 1.64 14 22 H 0.05 2.52 7.79 -2.39 -0.02 2.50 14 23 H 0.27 14.63 8.31 -92.70 -0.77 13.86 14 Total: -1.00 -64.31 230.33 4.75 -59.56 By element: Atomic # 1 Polarization: -3.68 SS G_CDS: 1.21 Total: -2.47 kcal Atomic # 6 Polarization: -19.56 SS G_CDS: 3.13 Total: -16.43 kcal Atomic # 7 Polarization: -84.59 SS G_CDS: -1.54 Total: -86.13 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.73 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -0.08 Total: -0.27 kcal Total: -64.31 4.75 -59.56 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085018890.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.957 kcal (2) G-P(sol) polarization free energy of solvation -64.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds