Wall clock time and date at job start Mon Mar 30 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46891 * 2 1 4 4 C 1.50694 * 109.47088 * 240.00216 * 2 1 3 5 5 H 1.07998 * 119.99935 * 239.99862 * 4 2 1 6 6 C 1.37877 * 120.00143 * 59.99825 * 4 2 1 7 7 N 1.31516 * 119.99984 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00041 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47380 * 270.00175 * 8 6 4 10 10 H 1.48503 * 109.47011 * 29.99947 * 8 6 4 11 11 H 1.48499 * 109.47252 * 149.99778 * 8 6 4 12 12 N 1.46897 * 109.47312 * 119.99981 * 2 1 3 13 13 C 1.48562 * 111.00062 * 48.51255 * 12 2 1 14 14 C 1.54382 * 104.59690 * 200.95803 * 13 12 2 15 15 C 1.54263 * 105.05690 * 23.85945 * 14 13 12 16 16 C 1.48560 * 111.00063 * 293.09700 * 12 2 1 17 17 H 1.09000 * 110.41513 * 40.26298 * 16 12 2 18 18 C 1.53001 * 110.41441 * 277.81904 * 16 12 2 19 19 O 1.42906 * 109.46677 * 294.99914 * 18 16 12 20 20 H 1.08997 * 109.47185 * 172.17872 * 1 2 3 21 21 H 1.09007 * 109.47272 * 292.17540 * 1 2 3 22 22 H 1.08993 * 109.47664 * 52.17425 * 1 2 3 23 23 H 0.96995 * 119.99580 * 180.02562 * 7 6 4 24 24 H 1.09001 * 110.41109 * 319.74193 * 13 12 2 25 25 H 1.09003 * 110.40568 * 82.18466 * 13 12 2 26 26 H 1.08997 * 110.32386 * 264.96076 * 14 13 12 27 27 H 1.09003 * 110.31804 * 142.74635 * 14 13 12 28 28 H 1.09006 * 110.32192 * 241.10174 * 15 14 13 29 29 H 1.08998 * 110.32536 * 118.89806 * 15 14 13 30 30 H 1.08998 * 109.47276 * 54.99445 * 18 16 12 31 31 H 1.09000 * 109.47438 * 175.00389 * 18 16 12 32 32 H 0.96700 * 113.99901 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0079 9 1 3.6304 -0.5439 -4.4119 10 1 2.4880 -2.5652 -3.7122 11 1 1.3444 -0.9489 -5.1123 12 7 2.0197 -0.6925 1.1994 13 6 1.3309 -1.9964 1.3799 14 6 1.5196 -2.3324 2.8748 15 6 1.7519 -0.9725 3.5650 16 6 1.6842 0.0707 2.4290 17 1 0.6799 0.4878 2.3555 18 6 2.7091 1.1823 2.6635 19 8 3.9882 0.6026 2.9283 20 1 -0.3633 -1.0181 -0.1398 21 1 -0.3634 0.3879 0.9517 22 1 -0.3634 0.6302 -0.8116 23 1 0.7088 1.1614 -3.4843 24 1 0.2713 -1.9027 1.1420 25 1 1.7952 -2.7609 0.7569 26 1 2.3864 -2.9791 3.0110 27 1 0.6237 -2.8100 3.2714 28 1 2.7328 -0.9517 4.0401 29 1 0.9701 -0.7827 4.3005 30 1 2.7721 1.8116 1.7758 31 1 2.4007 1.7869 3.5165 32 1 4.6884 1.2504 3.0865 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085397098.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:16 Heat of formation + Delta-G solvation = -43.195424 kcal Electronic energy + Delta-G solvation = -13606.756548 eV Core-core repulsion = 11374.389485 eV Total energy + Delta-G solvation = -2232.367063 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.72848 -35.80611 -33.63133 -31.15374 -29.54116 -27.22691 -25.20539 -24.38687 -21.70219 -19.88598 -18.55252 -17.00141 -15.98043 -15.26165 -14.79530 -14.29127 -14.08661 -13.01679 -12.88222 -12.69164 -12.38497 -11.70920 -11.57609 -10.95076 -10.82661 -10.59140 -10.56033 -10.36173 -10.12677 -10.10905 -9.80080 -9.74376 -9.34483 -8.81025 -8.34253 -7.13567 -5.96984 -3.98975 3.34470 3.40258 3.44798 4.45767 4.79712 4.98889 5.32364 5.35428 5.46129 5.61095 5.85921 5.92222 6.00670 6.12534 6.28605 6.38980 6.48495 6.64630 6.71412 6.78715 6.86316 6.89712 7.13456 7.43266 7.72739 7.90106 8.11019 8.16737 8.41479 8.64256 9.07650 9.65731 11.11066 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042614 B = 0.010894 C = 0.010387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.896147 B = 2569.682265 C = 2695.033951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.198 3.802 3 H 0.037 0.963 4 C -0.493 4.493 5 H 0.061 0.939 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.275 1.275 11 H -0.288 1.288 12 N -0.487 5.487 13 C 0.037 3.963 14 C -0.124 4.124 15 C -0.114 4.114 16 C 0.051 3.949 17 H 0.058 0.942 18 C 0.095 3.905 19 O -0.555 6.555 20 H 0.036 0.964 21 H 0.008 0.992 22 H 0.083 0.917 23 H 0.259 0.741 24 H 0.046 0.954 25 H 0.072 0.928 26 H 0.062 0.938 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.034 0.966 32 H 0.365 0.635 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 -0.641 9.635 9.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.091 3.909 3 H 0.055 0.945 4 C -0.532 4.532 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.538 5.538 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.199 1.199 11 H -0.214 1.214 12 N -0.211 5.211 13 C -0.091 4.091 14 C -0.163 4.163 15 C -0.152 4.152 16 C -0.058 4.058 17 H 0.076 0.924 18 C 0.017 3.983 19 O -0.358 6.358 20 H 0.055 0.945 21 H 0.027 0.973 22 H 0.102 0.898 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.052 0.948 32 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 0.807 -1.147 9.320 9.425 hybrid contribution -0.413 0.341 -0.850 1.005 sum 0.394 -0.806 8.470 8.518 Atomic orbital electron populations 1.22406 1.00967 1.00618 0.98906 1.19431 0.89678 0.94715 0.87054 0.94532 1.21075 1.30217 1.12325 0.89542 0.92059 1.24932 0.95303 0.95192 0.98981 1.69906 1.37362 1.23215 1.23268 0.86517 0.78457 0.80058 0.82485 1.20742 1.19949 1.21442 1.65653 1.52572 1.01823 1.01005 1.22992 0.97865 0.94057 0.94164 1.22307 1.00396 0.97057 0.96500 1.22205 1.01553 0.94621 0.96852 1.22703 0.95581 0.94602 0.92932 0.92402 1.22005 0.83958 0.94522 0.97813 1.86595 1.18647 1.36687 1.93877 0.94507 0.97335 0.89844 0.93137 0.93580 0.90911 0.91932 0.92734 0.90478 0.93000 0.93386 0.94807 0.79067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.16 7.82 37.16 0.29 -3.87 16 2 C 0.20 5.11 2.29 -68.87 -0.16 4.95 16 3 H 0.04 1.03 7.16 -51.93 -0.37 0.66 16 4 C -0.49 -13.93 8.31 -34.44 -0.29 -14.21 16 5 H 0.06 1.77 7.75 -52.49 -0.41 1.36 16 6 C 0.06 1.59 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -25.93 11.42 55.43 0.63 -25.30 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 N -0.49 -11.03 4.99 -215.61 -1.08 -12.10 16 13 C 0.04 0.77 5.76 -2.18 -0.01 0.76 16 14 C -0.12 -2.10 7.00 -25.35 -0.18 -2.28 16 15 C -0.11 -1.90 6.44 -25.35 -0.16 -2.06 16 16 C 0.05 0.97 2.56 -66.07 -0.17 0.80 16 17 H 0.06 1.12 5.96 -51.93 -0.31 0.81 16 18 C 0.10 1.64 6.91 37.16 0.26 1.89 16 19 O -0.55 -9.42 12.33 -35.23 -0.43 -9.85 16 20 H 0.04 0.89 6.39 -51.93 -0.33 0.56 16 21 H 0.01 0.17 6.09 -51.92 -0.32 -0.14 16 22 H 0.08 2.23 6.32 -51.93 -0.33 1.90 16 23 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 24 H 0.05 0.96 5.39 -51.93 -0.28 0.69 16 25 H 0.07 1.56 8.07 -51.93 -0.42 1.14 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.30 6.86 -51.93 -0.36 0.94 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.05 0.90 7.21 -51.93 -0.37 0.52 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.36 4.31 9.12 45.56 0.42 4.73 16 LS Contribution 249.18 15.07 3.76 3.76 Total: -1.00 -30.50 249.18 -6.56 -37.06 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -3.90 Total: 2.13 kcal Atomic # 6 Polarization: -12.01 SS G_CDS: -0.51 Total: -12.52 kcal Atomic # 7 Polarization: -36.96 SS G_CDS: -0.44 Total: -37.40 kcal Atomic # 8 Polarization: -9.42 SS G_CDS: -0.43 Total: -9.85 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.50 -6.56 -37.06 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085397098.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.139 kcal (2) G-P(sol) polarization free energy of solvation -30.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds