Wall clock time and date at job start Mon Mar 30 2020 01:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46891 * 2 1 4 4 C 1.50694 * 109.47088 * 240.00216 * 2 1 3 5 5 H 1.07998 * 119.99935 * 239.99862 * 4 2 1 6 6 C 1.37877 * 120.00143 * 59.99825 * 4 2 1 7 7 N 1.31516 * 119.99984 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00041 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47380 * 270.00175 * 8 6 4 10 10 H 1.48503 * 109.47011 * 29.99947 * 8 6 4 11 11 H 1.48499 * 109.47252 * 149.99778 * 8 6 4 12 12 N 1.46897 * 109.47312 * 119.99981 * 2 1 3 13 13 C 1.48562 * 111.00062 * 48.51255 * 12 2 1 14 14 C 1.54382 * 104.59690 * 200.95803 * 13 12 2 15 15 C 1.54263 * 105.05690 * 23.85945 * 14 13 12 16 16 C 1.48560 * 111.00063 * 293.09700 * 12 2 1 17 17 H 1.09000 * 110.41513 * 40.26298 * 16 12 2 18 18 C 1.53001 * 110.41441 * 277.81904 * 16 12 2 19 19 O 1.42906 * 109.46677 * 294.99914 * 18 16 12 20 20 H 1.08997 * 109.47185 * 172.17872 * 1 2 3 21 21 H 1.09007 * 109.47272 * 292.17540 * 1 2 3 22 22 H 1.08993 * 109.47664 * 52.17425 * 1 2 3 23 23 H 0.96995 * 119.99580 * 180.02562 * 7 6 4 24 24 H 1.09001 * 110.41109 * 319.74193 * 13 12 2 25 25 H 1.09003 * 110.40568 * 82.18466 * 13 12 2 26 26 H 1.08997 * 110.32386 * 264.96076 * 14 13 12 27 27 H 1.09003 * 110.31804 * 142.74635 * 14 13 12 28 28 H 1.09006 * 110.32192 * 241.10174 * 15 14 13 29 29 H 1.08998 * 110.32536 * 118.89806 * 15 14 13 30 30 H 1.08998 * 109.47276 * 54.99445 * 18 16 12 31 31 H 1.09000 * 109.47438 * 175.00389 * 18 16 12 32 32 H 0.96700 * 113.99901 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3224 -1.1194 -4.0079 9 1 3.6304 -0.5439 -4.4119 10 1 2.4880 -2.5652 -3.7122 11 1 1.3444 -0.9489 -5.1123 12 7 2.0197 -0.6925 1.1994 13 6 1.3309 -1.9964 1.3799 14 6 1.5196 -2.3324 2.8748 15 6 1.7519 -0.9725 3.5650 16 6 1.6842 0.0707 2.4290 17 1 0.6799 0.4878 2.3555 18 6 2.7091 1.1823 2.6635 19 8 3.9882 0.6026 2.9283 20 1 -0.3633 -1.0181 -0.1398 21 1 -0.3634 0.3879 0.9517 22 1 -0.3634 0.6302 -0.8116 23 1 0.7088 1.1614 -3.4843 24 1 0.2713 -1.9027 1.1420 25 1 1.7952 -2.7609 0.7569 26 1 2.3864 -2.9791 3.0110 27 1 0.6237 -2.8100 3.2714 28 1 2.7328 -0.9517 4.0401 29 1 0.9701 -0.7827 4.3005 30 1 2.7721 1.8116 1.7758 31 1 2.4007 1.7869 3.5165 32 1 4.6884 1.2504 3.0865 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085397098.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:16 Heat of formation + Delta-G solvation = -66.547475 kcal Electronic energy + Delta-G solvation = -13607.769169 eV Core-core repulsion = 11374.389485 eV Total energy + Delta-G solvation = -2233.379684 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.31810 -37.21127 -35.53503 -33.05052 -30.99463 -29.02283 -27.33533 -25.83179 -23.46698 -21.41398 -20.23425 -18.42054 -18.02269 -17.07627 -16.28248 -16.02115 -15.65644 -14.78066 -14.53330 -14.31741 -13.85522 -13.52979 -13.39266 -12.84321 -12.51167 -12.41564 -12.22351 -12.15526 -11.92909 -11.71782 -11.48398 -11.23672 -10.84951 -10.71321 -10.49274 -8.88912 -8.12355 -6.22139 1.40244 1.40808 1.51632 2.41985 3.16691 3.43652 3.54020 3.87244 4.07010 4.26442 4.44703 4.52217 4.58749 4.69454 4.76983 4.85418 4.93621 4.96725 5.05441 5.10604 5.22800 5.31200 5.45239 5.55419 5.70800 5.81695 6.18319 6.46743 6.70691 6.91088 7.08389 7.47086 8.94376 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.042614 B = 0.010894 C = 0.010387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.896147 B = 2569.682265 C = 2695.033951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.205 3.795 3 H 0.004 0.996 4 C -0.513 4.513 5 H 0.048 0.952 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.958 3.042 9 H -0.277 1.277 10 H -0.271 1.271 11 H -0.281 1.281 12 N -0.506 5.506 13 C 0.033 3.967 14 C -0.116 4.116 15 C -0.105 4.105 16 C 0.041 3.959 17 H 0.055 0.945 18 C 0.099 3.901 19 O -0.572 6.572 20 H 0.033 0.967 21 H 0.031 0.969 22 H 0.057 0.943 23 H 0.261 0.739 24 H 0.040 0.960 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.022 0.978 31 H 0.072 0.928 32 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.664 -1.197 10.855 10.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.097 3.903 3 H 0.022 0.978 4 C -0.552 4.552 5 H 0.066 0.934 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.784 3.216 9 H -0.203 1.203 10 H -0.196 1.196 11 H -0.206 1.206 12 N -0.229 5.229 13 C -0.095 4.095 14 C -0.154 4.154 15 C -0.143 4.143 16 C -0.068 4.068 17 H 0.073 0.927 18 C 0.020 3.980 19 O -0.379 6.379 20 H 0.052 0.948 21 H 0.050 0.950 22 H 0.075 0.925 23 H 0.070 0.930 24 H 0.058 0.942 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.101 0.899 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.040 0.960 31 H 0.090 0.910 32 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 0.835 -1.695 10.560 10.728 hybrid contribution -0.385 0.540 -1.191 1.363 sum 0.449 -1.155 9.369 9.451 Atomic orbital electron populations 1.22179 1.00162 0.99848 0.99082 1.19148 0.90112 0.92977 0.88046 0.97793 1.21315 1.30488 1.12243 0.91157 0.93410 1.25680 0.95411 0.95867 1.01743 1.70021 1.37946 1.24156 1.23975 0.85550 0.78048 0.78999 0.78988 1.20284 1.19572 1.20632 1.65548 1.53134 1.02921 1.01333 1.23017 0.96937 0.92724 0.96818 1.22279 1.02000 0.97633 0.93483 1.22183 1.02719 0.93176 0.96248 1.22901 0.96036 0.95666 0.92191 0.92704 1.21942 0.83996 0.93781 0.98252 1.86524 1.19277 1.38213 1.93848 0.94812 0.95003 0.92462 0.92973 0.94201 0.92815 0.91474 0.89926 0.90441 0.89994 0.95983 0.91044 0.76553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.59 7.82 71.98 0.56 -7.03 16 2 C 0.20 10.79 2.29 44.17 0.10 10.89 16 3 H 0.00 0.24 7.16 -2.38 -0.02 0.23 16 4 C -0.51 -29.63 8.31 25.60 0.21 -29.41 16 5 H 0.05 2.82 7.75 -2.91 -0.02 2.79 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -53.99 11.42 21.45 0.24 -53.75 16 8 Si 0.96 45.13 29.54 68.60 2.03 47.15 16 9 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 11 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 12 N -0.51 -22.87 4.99 -836.07 -4.17 -27.05 16 13 C 0.03 1.34 5.76 86.45 0.50 1.84 16 14 C -0.12 -3.60 7.00 31.49 0.22 -3.38 16 15 C -0.11 -3.16 6.44 31.49 0.20 -2.96 16 16 C 0.04 1.49 2.56 45.06 0.12 1.61 16 17 H 0.06 2.03 5.96 -2.39 -0.01 2.02 16 18 C 0.10 3.24 6.91 71.98 0.50 3.74 16 19 O -0.57 -18.45 12.33 -148.98 -1.84 -20.29 16 20 H 0.03 1.64 6.39 -2.39 -0.02 1.62 16 21 H 0.03 1.37 6.09 -2.38 -0.01 1.36 16 22 H 0.06 3.12 6.32 -2.39 -0.02 3.10 16 23 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 24 H 0.04 1.65 5.39 -2.39 -0.01 1.63 16 25 H 0.05 2.32 8.07 -2.39 -0.02 2.31 16 26 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 28 H 0.08 2.35 6.86 -2.38 -0.02 2.33 16 29 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.02 0.83 7.21 -2.39 -0.02 0.81 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.39 8.44 9.12 -74.06 -0.68 7.77 16 Total: -1.00 -65.48 249.18 -0.44 -65.93 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.43 Total: 11.61 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 2.86 Total: -23.61 kcal Atomic # 7 Polarization: -76.87 SS G_CDS: -3.93 Total: -80.80 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -1.84 Total: -20.29 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -65.48 -0.44 -65.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085397098.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.620 kcal (2) G-P(sol) polarization free energy of solvation -65.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds