Wall clock time and date at job start Mon Mar 30 2020 02:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.47811 * 110.99794 * 2 1 4 4 C 1.45860 * 112.91605 * 153.86940 * 3 2 1 5 5 C 1.54505 * 111.59199 * 61.32703 * 4 3 2 6 6 C 1.50461 * 108.85556 * 282.80539 * 5 4 3 7 7 O 1.42905 * 108.77116 * 331.24046 * 6 5 4 8 8 C 1.50692 * 108.77315 * 212.95338 * 6 5 4 9 9 H 1.08000 * 120.00458 * 0.02562 * 8 6 5 10 10 C 1.37880 * 120.00514 * 180.02562 * 8 6 5 11 11 N 1.31515 * 119.99212 * 359.97438 * 10 8 6 12 12 Si 1.86795 * 120.00504 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46951 * 359.97438 * 12 10 8 14 14 H 1.48496 * 109.47326 * 120.00034 * 12 10 8 15 15 H 1.48501 * 109.46940 * 240.00132 * 12 10 8 16 16 C 1.54294 * 113.03243 * 92.15509 * 6 5 4 17 17 C 1.44274 * 111.00192 * 238.02192 * 2 1 3 18 18 H 1.09002 * 109.47401 * 56.04357 * 1 2 3 19 19 H 1.09001 * 109.46874 * 296.04369 * 1 2 3 20 20 H 1.09004 * 109.46970 * 176.04503 * 1 2 3 21 21 H 1.09003 * 108.79158 * 274.75601 * 3 2 1 22 22 H 1.09004 * 108.78898 * 33.09755 * 3 2 1 23 23 H 1.09003 * 109.05607 * 181.87221 * 4 3 2 24 24 H 1.09008 * 109.05627 * 300.85614 * 4 3 2 25 25 H 1.08998 * 109.57671 * 42.61841 * 5 4 3 26 26 H 1.09008 * 109.57337 * 162.99770 * 5 4 3 27 27 H 0.96700 * 113.99990 * 179.97438 * 7 6 5 28 28 H 0.97006 * 120.00059 * 180.02562 * 11 10 8 29 29 H 1.08994 * 108.92267 * 79.02560 * 16 6 5 30 30 H 1.09006 * 108.91744 * 197.67589 * 16 6 5 31 31 H 1.09002 * 108.97203 * 339.95130 * 17 2 1 32 32 H 1.08997 * 108.97712 * 98.65991 * 17 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9987 1.3800 0.0000 4 6 3.3283 1.4780 0.5917 5 6 4.3623 0.6382 -0.1911 6 6 4.1835 -0.8118 0.1686 7 8 3.6671 -0.8954 1.4985 8 6 5.5281 -1.4910 0.1278 9 1 6.4111 -0.9256 -0.1313 10 6 5.6313 -2.8343 0.4210 11 7 4.5561 -3.5227 0.7369 12 14 7.2981 -3.6759 0.3711 13 1 8.3401 -2.6883 -0.0083 14 1 7.6103 -4.2358 1.7105 15 1 7.2688 -4.7729 -0.6294 16 6 3.2248 -1.5563 -0.7839 17 6 1.9861 -0.7133 -1.1425 18 1 -0.3634 0.5740 -0.8524 19 1 -0.3633 0.4512 0.9233 20 1 -0.3633 -1.0253 -0.0709 21 1 2.0446 1.7384 -1.0284 22 1 1.3174 2.0175 0.5635 23 1 3.6426 2.5217 0.5897 24 1 3.2871 1.1209 1.6208 25 1 4.2054 0.7709 -1.2615 26 1 5.3696 0.9588 0.0748 27 1 3.5223 -1.8000 1.8080 28 1 4.6286 -4.4677 0.9436 29 1 3.7598 -1.8056 -1.7001 30 1 2.8962 -2.4787 -0.3048 31 1 1.2091 -1.3721 -1.5304 32 1 2.2580 0.0053 -1.9157 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085879431.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:01 Heat of formation + Delta-G solvation = -61.842311 kcal Electronic energy + Delta-G solvation = -13996.461890 eV Core-core repulsion = 11763.286237 eV Total energy + Delta-G solvation = -2233.175653 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.23208 -37.21661 -34.24597 -33.58693 -32.15230 -29.05297 -26.97246 -25.28926 -24.16615 -21.15808 -20.27826 -18.82680 -17.22629 -16.57720 -16.24926 -15.68050 -15.39413 -14.76215 -14.47345 -14.16030 -13.88406 -13.30292 -13.04277 -12.99679 -12.88076 -12.37300 -12.31173 -12.18883 -11.75024 -11.57338 -11.35562 -11.05138 -10.82382 -10.45683 -9.71485 -8.91050 -8.06099 -6.25709 1.38240 1.41610 1.51694 2.42647 3.12383 3.22030 4.08575 4.20043 4.38227 4.44726 4.51165 4.60506 4.65892 4.72828 4.82886 4.89695 5.07080 5.08147 5.16917 5.20035 5.23554 5.57978 5.66203 5.70107 6.00099 6.23908 6.35081 6.45064 6.53147 6.82746 7.45919 7.77178 8.91855 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.055805 B = 0.012056 C = 0.011036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.629999 B = 2321.848493 C = 2536.601226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.539 5.539 3 C 0.070 3.930 4 C -0.109 4.109 5 C -0.092 4.092 6 C 0.252 3.748 7 O -0.574 6.574 8 C -0.567 4.567 9 H 0.043 0.957 10 C 0.029 3.971 11 N -0.908 5.908 12 Si 0.950 3.050 13 H -0.275 1.275 14 H -0.281 1.281 15 H -0.279 1.279 16 C -0.110 4.110 17 C 0.065 3.935 18 H 0.031 0.969 19 H 0.073 0.927 20 H 0.062 0.938 21 H 0.032 0.968 22 H 0.076 0.924 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.041 0.959 27 H 0.358 0.642 28 H 0.264 0.736 29 H 0.024 0.976 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.997 6.182 -2.616 9.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.263 5.263 3 C -0.057 4.057 4 C -0.146 4.146 5 C -0.129 4.129 6 C 0.212 3.788 7 O -0.381 6.381 8 C -0.605 4.605 9 H 0.062 0.938 10 C -0.171 4.171 11 N -0.548 5.548 12 Si 0.777 3.223 13 H -0.199 1.199 14 H -0.207 1.207 15 H -0.205 1.205 16 C -0.149 4.149 17 C -0.064 4.064 18 H 0.050 0.950 19 H 0.092 0.908 20 H 0.081 0.919 21 H 0.050 0.950 22 H 0.095 0.905 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.205 0.795 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -5.870 6.431 -2.187 8.978 hybrid contribution 0.832 -1.136 -0.764 1.602 sum -5.038 5.295 -2.952 7.882 Atomic orbital electron populations 1.22461 0.86574 1.01647 1.01008 1.61441 1.07732 1.14400 1.42756 1.20920 0.96792 0.88823 0.99153 1.20356 0.94498 0.98323 1.01456 1.21307 0.97994 0.95274 0.98347 1.18280 0.88782 0.91093 0.80614 1.86184 1.87360 1.31615 1.32900 1.22419 0.95528 0.95237 1.47342 0.93843 1.25649 0.99640 0.97790 0.94037 1.69826 1.28802 1.08732 1.47469 0.85639 0.80774 0.78291 0.77616 1.19943 1.20654 1.20497 1.22419 0.94785 0.99489 0.98249 1.21932 0.96997 0.96703 0.90777 0.95036 0.90838 0.91935 0.94967 0.90515 0.91138 0.91717 0.92965 0.94018 0.79453 0.92653 0.95674 0.92223 0.92583 0.95117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.87 9.22 127.69 1.18 2.05 16 2 N -0.54 -19.64 3.89 -938.09 -3.64 -23.28 16 3 C 0.07 2.31 4.96 83.94 0.42 2.72 16 4 C -0.11 -4.06 5.35 28.92 0.15 -3.90 16 5 C -0.09 -4.02 5.02 30.28 0.15 -3.87 16 6 C 0.25 12.75 0.63 -11.92 -0.01 12.74 16 7 O -0.57 -30.45 9.88 -148.98 -1.47 -31.92 16 8 C -0.57 -31.78 7.97 25.60 0.20 -31.57 16 9 H 0.04 2.46 7.45 -2.91 -0.02 2.44 16 10 C 0.03 1.57 5.19 84.66 0.44 2.00 16 11 N -0.91 -50.29 9.72 21.45 0.21 -50.08 16 12 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 13 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 14 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 C -0.11 -5.32 4.51 31.39 0.14 -5.17 16 17 C 0.06 2.51 5.17 87.15 0.45 2.96 16 18 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 19 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 20 H 0.06 1.75 7.89 -2.38 -0.02 1.73 16 21 H 0.03 0.99 7.24 -2.39 -0.02 0.97 16 22 H 0.08 2.15 7.79 -2.39 -0.02 2.13 16 23 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.06 2.78 6.38 -2.38 -0.02 2.76 16 25 H 0.05 2.15 7.15 -2.39 -0.02 2.13 16 26 H 0.04 1.88 7.51 -2.38 -0.02 1.86 16 27 H 0.36 20.21 7.09 -74.06 -0.53 19.68 16 28 H 0.26 13.94 8.31 -92.70 -0.77 13.17 16 29 H 0.02 1.24 7.97 -2.39 -0.02 1.22 16 30 H 0.06 3.18 6.30 -2.38 -0.02 3.17 16 31 H 0.06 2.00 7.43 -2.39 -0.02 1.98 16 32 H 0.03 1.13 6.51 -2.39 -0.02 1.11 16 Total: -1.00 -58.86 241.81 0.82 -58.04 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.57 Total: 23.37 kcal Atomic # 6 Polarization: -25.16 SS G_CDS: 3.13 Total: -22.03 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -3.44 Total: -73.36 kcal Atomic # 8 Polarization: -30.45 SS G_CDS: -1.47 Total: -31.92 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -58.86 0.82 -58.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085879431.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.800 kcal (2) G-P(sol) polarization free energy of solvation -58.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds