Wall clock time and date at job start Mon Mar 30 2020 02:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 120.00096 * 2 1 4 4 H 1.48497 * 109.46675 * 270.00183 * 3 2 1 5 5 H 1.48498 * 109.47098 * 29.99666 * 3 2 1 6 6 H 1.48496 * 109.46793 * 150.00036 * 3 2 1 7 7 C 1.37877 * 119.99538 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99472 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00259 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47061 * 179.97438 * 9 7 2 11 11 C 1.76198 * 102.99924 * 179.97438 * 10 9 7 12 12 C 1.38805 * 122.62001 * 180.02562 * 11 10 9 13 13 C 1.33393 * 114.88375 * 180.02562 * 12 11 10 14 14 S 1.75860 * 109.70590 * 359.73459 * 13 12 11 15 15 C 1.33808 * 122.62065 * 0.03117 * 11 10 9 16 16 H 0.97008 * 119.99674 * 359.97438 * 1 2 3 17 17 H 1.08998 * 109.46948 * 59.99601 * 9 7 2 18 18 H 1.09003 * 109.46728 * 299.99607 * 9 7 2 19 19 H 1.08000 * 122.55733 * 0.04111 * 12 11 10 20 20 H 1.07993 * 125.14504 * 180.02562 * 13 12 11 21 21 H 1.08002 * 125.19646 * 359.96756 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 6 1.3823 -5.2949 0.0013 12 6 1.8776 -6.5915 0.0020 13 6 0.9475 -7.5477 0.0020 14 16 -0.6527 -6.8183 0.0087 15 6 0.0472 -5.2050 0.0011 16 1 -0.4850 0.8401 0.0004 17 1 0.6246 -2.5570 -0.8896 18 1 0.6240 -2.5567 0.8904 19 1 2.9354 -6.8096 0.0028 20 1 1.1470 -8.6090 0.0029 21 1 -0.5146 -4.2826 0.0010 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000090568902.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:55 Heat of formation + Delta-G solvation = 19.700716 kcal Electronic energy + Delta-G solvation = -8334.331970 eV Core-core repulsion = 6620.813179 eV Total energy + Delta-G solvation = -1713.518791 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 200.002 amu Computer time = 0.06 seconds Orbital eigenvalues (eV) -37.24068 -33.24528 -29.58753 -28.33790 -23.79232 -23.14348 -19.33250 -17.73959 -16.33772 -15.65225 -14.90386 -13.99802 -13.15799 -12.93951 -12.48776 -12.25247 -12.21156 -12.03364 -10.94171 -10.87675 -10.70999 -10.06038 -9.67025 -9.07024 -9.05377 -8.61821 -8.39073 -6.55011 -6.26277 -4.31798 1.30548 1.84710 2.17298 2.84195 2.98127 3.22973 3.28835 3.34182 3.79225 4.30177 5.11274 5.21574 5.58254 5.89528 6.16625 6.52411 6.60453 6.97663 7.00940 7.66792 7.90438 8.69435 9.32111 10.85041 Molecular weight = 200.00amu Principal moments of inertia in cm(-1) A = 0.080955 B = 0.008114 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.790270 B = 3449.936786 C = 3780.581520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.909 3.091 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.518 4.518 8 H 0.069 0.931 9 C 0.070 3.930 10 S -0.141 6.141 11 C -0.094 4.094 12 C -0.108 4.108 13 C -0.211 4.211 14 S 0.076 5.924 15 C -0.221 4.221 16 H 0.267 0.733 17 H 0.042 0.958 18 H 0.043 0.957 19 H 0.141 0.859 20 H 0.162 0.838 21 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.186 -10.753 0.013 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.558 4.558 8 H 0.087 0.913 9 C -0.076 4.076 10 S 0.101 5.899 11 C -0.217 4.217 12 C -0.142 4.142 13 C -0.347 4.347 14 S 0.335 5.665 15 C -0.368 4.368 16 H 0.076 0.924 17 H 0.061 0.939 18 H 0.061 0.939 19 H 0.158 0.842 20 H 0.180 0.820 21 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -0.192 -11.072 0.026 11.074 hybrid contribution 0.341 1.338 -0.016 1.381 sum 0.149 -9.734 0.010 9.735 Atomic orbital electron populations 1.69953 1.06170 1.27520 1.49119 1.24962 0.95004 0.99346 0.94395 0.86314 0.79730 0.81999 0.78421 1.20257 1.20888 1.19475 1.20623 0.93480 0.88587 1.53090 0.91333 1.21337 0.94554 0.91019 1.00740 1.85271 1.16755 0.96856 1.90985 1.21018 0.96218 0.99032 1.05479 1.19875 1.00681 0.90255 1.03382 1.25483 0.95431 1.02760 1.11070 1.83929 1.08858 0.99103 1.74600 1.25575 0.96759 1.00558 1.13884 0.92359 0.93935 0.93922 0.84167 0.82023 0.81461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.53 13.29 55.43 0.74 -24.79 14 2 C 0.07 1.86 5.46 -17.82 -0.10 1.77 14 3 Si 0.91 21.05 29.54 -169.99 -5.02 16.03 14 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 14 5 H -0.28 -6.46 7.11 56.52 0.40 -6.05 14 6 H -0.27 -6.17 7.11 56.52 0.40 -5.76 14 7 C -0.52 -14.40 9.13 -34.44 -0.31 -14.71 14 8 H 0.07 1.88 7.71 -52.49 -0.40 1.48 14 9 C 0.07 1.81 4.24 36.01 0.15 1.97 14 10 S -0.14 -3.11 21.94 -107.50 -2.36 -5.47 14 11 C -0.09 -1.81 6.02 -40.93 -0.25 -2.06 14 12 C -0.11 -1.75 10.03 -41.07 -0.41 -2.16 14 13 C -0.21 -2.92 11.22 29.04 0.33 -2.60 14 14 S 0.08 1.12 23.33 -107.50 -2.51 -1.39 14 15 C -0.22 -4.12 10.42 29.18 0.30 -3.82 14 16 H 0.27 7.18 8.31 -40.82 -0.34 6.84 14 17 H 0.04 1.14 7.95 -51.92 -0.41 0.73 14 18 H 0.04 1.14 7.95 -51.92 -0.41 0.73 14 19 H 0.14 2.01 8.06 -52.49 -0.42 1.58 14 20 H 0.16 1.68 8.06 -52.49 -0.42 1.26 14 21 H 0.17 3.30 6.71 -52.49 -0.35 2.95 14 LS Contribution 220.68 15.07 3.33 3.33 Total: -1.00 -28.38 220.68 -7.68 -36.06 By element: Atomic # 1 Polarization: -0.59 SS G_CDS: -1.56 Total: -2.16 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -0.29 Total: -21.61 kcal Atomic # 7 Polarization: -25.53 SS G_CDS: 0.74 Total: -24.79 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: -1.99 SS G_CDS: -4.87 Total: -6.86 kcal Total LS contribution 3.33 Total: 3.33 kcal Total: -28.38 -7.68 -36.06 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090568902.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.756 kcal (2) G-P(sol) polarization free energy of solvation -28.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.06 seconds