Wall clock time and date at job start Mon Mar 30 2020 02:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 120.00096 * 2 1 4 4 H 1.48497 * 109.46675 * 270.00183 * 3 2 1 5 5 H 1.48498 * 109.47098 * 29.99666 * 3 2 1 6 6 H 1.48496 * 109.46793 * 150.00036 * 3 2 1 7 7 C 1.37877 * 119.99538 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99472 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00259 * 0.02562 * 7 2 1 10 10 S 1.81399 * 109.47061 * 179.97438 * 9 7 2 11 11 C 1.76198 * 102.99924 * 179.97438 * 10 9 7 12 12 C 1.38805 * 122.62001 * 180.02562 * 11 10 9 13 13 C 1.33393 * 114.88375 * 180.02562 * 12 11 10 14 14 S 1.75860 * 109.70590 * 359.73459 * 13 12 11 15 15 C 1.33808 * 122.62065 * 0.03117 * 11 10 9 16 16 H 0.97008 * 119.99674 * 359.97438 * 1 2 3 17 17 H 1.08998 * 109.46948 * 59.99601 * 9 7 2 18 18 H 1.09003 * 109.46728 * 299.99607 * 9 7 2 19 19 H 1.08000 * 122.55733 * 0.04111 * 12 11 10 20 20 H 1.07993 * 125.14504 * 180.02562 * 13 12 11 21 21 H 1.08002 * 125.19646 * 359.96756 * 15 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 16 2.4297 -3.8780 0.0005 11 6 1.3823 -5.2949 0.0013 12 6 1.8776 -6.5915 0.0020 13 6 0.9475 -7.5477 0.0020 14 16 -0.6527 -6.8183 0.0087 15 6 0.0472 -5.2050 0.0011 16 1 -0.4850 0.8401 0.0004 17 1 0.6246 -2.5570 -0.8896 18 1 0.6240 -2.5567 0.8904 19 1 2.9354 -6.8096 0.0028 20 1 1.1470 -8.6090 0.0029 21 1 -0.5146 -4.2826 0.0010 RHF calculation, no. of doubly occupied orbitals= 30 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000090568902.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:55 Heat of formation + Delta-G solvation = 3.487205 kcal Electronic energy + Delta-G solvation = -8335.035040 eV Core-core repulsion = 6620.813179 eV Total energy + Delta-G solvation = -1714.221861 eV No. of doubly occupied orbitals = 30 Molecular weight (most abundant/longest-lived isotopes) = 200.002 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -38.56896 -35.36466 -31.23112 -30.14037 -25.31723 -25.05306 -20.71598 -19.23607 -18.28734 -17.11083 -16.73845 -15.67953 -14.84522 -14.60768 -14.17017 -13.97816 -13.72348 -13.56784 -12.76744 -12.59931 -12.27492 -11.77612 -11.64127 -10.93901 -10.82827 -10.35462 -9.65280 -8.37686 -8.21668 -6.52531 -0.00888 0.42358 0.94497 1.19277 1.40259 1.41305 1.54275 1.62919 2.00838 2.34652 2.97440 4.02175 4.36887 4.55639 4.83481 4.86065 4.92706 5.20664 5.30472 5.51654 5.79708 6.54829 7.16522 8.74596 Molecular weight = 200.00amu Principal moments of inertia in cm(-1) A = 0.080955 B = 0.008114 C = 0.007404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.790270 B = 3449.936786 C = 3780.581520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.016 3.984 3 Si 0.980 3.020 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.543 4.543 8 H 0.067 0.933 9 C 0.078 3.922 10 S -0.143 6.143 11 C -0.107 4.107 12 C -0.133 4.133 13 C -0.183 4.183 14 S 0.136 5.864 15 C -0.256 4.256 16 H 0.272 0.728 17 H 0.018 0.982 18 H 0.018 0.982 19 H 0.158 0.842 20 H 0.208 0.792 21 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.715 -12.185 0.008 12.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.185 4.185 3 Si 0.803 3.197 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.582 4.582 8 H 0.086 0.914 9 C -0.070 4.070 10 S 0.098 5.902 11 C -0.232 4.232 12 C -0.165 4.165 13 C -0.320 4.320 14 S 0.396 5.604 15 C -0.402 4.402 16 H 0.081 0.919 17 H 0.037 0.963 18 H 0.037 0.963 19 H 0.176 0.824 20 H 0.225 0.775 21 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 0.318 -12.529 0.019 12.533 hybrid contribution 0.071 1.598 -0.015 1.599 sum 0.388 -10.931 0.005 10.938 Atomic orbital electron populations 1.70067 1.07792 1.28749 1.49548 1.25953 0.95914 1.03192 0.93477 0.85214 0.78488 0.77120 0.78871 1.19292 1.20015 1.18703 1.20975 0.93654 0.89907 1.53681 0.91438 1.20963 0.94814 0.92814 0.98360 1.84945 1.16309 0.97069 1.91926 1.21139 0.96018 0.99020 1.07044 1.19970 1.02242 0.88925 1.05359 1.26041 0.94173 1.04502 1.07252 1.83733 1.08622 0.95230 1.72842 1.25600 0.97188 1.02580 1.14783 0.91949 0.96348 0.96335 0.82421 0.77468 0.83969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.33 13.29 21.45 0.28 -54.05 14 2 C 0.02 0.90 5.46 84.65 0.46 1.36 14 3 Si 0.98 43.35 29.54 68.60 2.03 45.37 14 4 H -0.27 -11.40 7.11 99.48 0.71 -10.69 14 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 14 6 H -0.26 -11.23 7.11 99.48 0.71 -10.53 14 7 C -0.54 -31.10 9.13 25.60 0.23 -30.87 14 8 H 0.07 3.79 7.71 -2.91 -0.02 3.76 14 9 C 0.08 4.23 4.24 71.24 0.30 4.53 14 10 S -0.14 -6.49 21.94 -56.49 -1.24 -7.73 14 11 C -0.11 -4.13 6.02 21.40 0.13 -4.00 14 12 C -0.13 -3.97 10.03 21.31 0.21 -3.75 14 13 C -0.18 -4.32 11.22 66.72 0.75 -3.57 14 14 S 0.14 3.65 23.33 -56.49 -1.32 2.33 14 15 C -0.26 -9.65 10.42 66.81 0.70 -8.95 14 16 H 0.27 14.86 8.31 -92.70 -0.77 14.09 14 17 H 0.02 1.05 7.95 -2.39 -0.02 1.03 14 18 H 0.02 1.06 7.95 -2.39 -0.02 1.04 14 19 H 0.16 4.09 8.06 -2.91 -0.02 4.07 14 20 H 0.21 3.01 8.06 -2.91 -0.02 2.99 14 21 H 0.14 6.00 6.71 -2.91 -0.02 5.98 14 Total: -1.00 -62.35 220.68 3.76 -58.59 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: 1.22 Total: 0.74 kcal Atomic # 6 Polarization: -48.04 SS G_CDS: 2.78 Total: -45.25 kcal Atomic # 7 Polarization: -54.33 SS G_CDS: 0.28 Total: -54.05 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -2.84 SS G_CDS: -2.56 Total: -5.40 kcal Total: -62.35 3.76 -58.59 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000090568902.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.076 kcal (2) G-P(sol) polarization free energy of solvation -62.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds