Wall clock time and date at job start Mon Mar 30 2020 02:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48490 * 109.47405 * 240.00239 * 3 2 1 5 5 H 1.48503 * 109.46845 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47399 * 119.99834 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 180.27722 * 7 2 1 9 9 C 1.50706 * 119.99394 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46684 * 179.97438 * 10 9 7 12 12 C 1.37043 * 126.40211 * 99.71823 * 11 10 9 13 13 C 1.34609 * 106.83198 * 179.83925 * 12 11 10 14 14 N 1.34202 * 108.04932 * 0.42124 * 13 12 11 15 15 C 1.30626 * 109.25582 * 359.73321 * 14 13 12 16 16 Cl 1.73601 * 125.66314 * 179.97438 * 15 14 13 17 17 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 18 18 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 19 19 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 20 20 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 21 21 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 22 22 H 1.08003 * 126.58486 * 359.97438 * 12 11 10 23 23 H 1.07996 * 125.97543 * 180.11718 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 0.0040 9 6 1.2510 -2.4991 -0.0017 10 6 2.2453 -3.6620 -0.0027 11 7 1.5127 -4.9308 -0.0033 12 6 1.2670 -5.7275 -1.0908 13 6 0.5701 -6.7899 -0.6462 14 7 0.3860 -6.6431 0.6750 15 6 0.9482 -5.5312 1.0673 16 17 0.9663 -4.9253 2.6940 17 1 -0.4849 0.8400 0.0004 18 1 0.6240 -2.5575 0.8880 19 1 0.6247 -2.5562 -0.8920 20 1 2.8720 -3.6035 -0.8927 21 1 2.8719 -3.6051 0.8873 22 1 1.5753 -5.5402 -2.1089 23 1 0.2163 -7.6137 -1.2484 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108288509.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:48 Heat of formation + Delta-G solvation = 25.692673 kcal Electronic energy + Delta-G solvation = -10472.787346 eV Core-core repulsion = 8347.024560 eV Total energy + Delta-G solvation = -2125.762786 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -43.01187 -37.87099 -36.48256 -34.57544 -31.39429 -30.13325 -26.96231 -23.72083 -22.47380 -21.78861 -18.95919 -17.93739 -16.80428 -16.22884 -15.92559 -15.43938 -14.76097 -14.54501 -14.18985 -13.59101 -12.91394 -12.87674 -12.63577 -12.45136 -12.15659 -11.95899 -11.48411 -11.12526 -10.61314 -10.59034 -9.39119 -8.25163 -6.38438 0.44172 0.95378 1.42294 1.44470 1.52367 2.00133 2.02698 2.40940 3.10011 3.83540 3.89977 4.36012 4.44806 4.61415 4.63281 5.11466 5.33266 5.47899 5.66186 5.69524 5.90522 6.10590 6.76849 6.85419 7.32298 8.86665 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.051223 B = 0.009184 C = 0.008441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 546.502077 B = 3047.989285 C = 3316.449480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.968 3.032 4 H -0.263 1.263 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.542 4.542 8 H 0.074 0.926 9 C 0.021 3.979 10 C 0.112 3.888 11 N -0.440 5.440 12 C -0.036 4.036 13 C -0.037 4.037 14 N -0.503 5.503 15 C 0.214 3.786 16 Cl 0.026 6.974 17 H 0.264 0.736 18 H -0.001 1.001 19 H -0.005 1.005 20 H 0.113 0.887 21 H 0.090 0.910 22 H 0.215 0.785 23 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.883 -8.256 -1.214 9.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.792 3.208 4 H -0.187 1.187 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.581 4.581 8 H 0.092 0.908 9 C -0.017 4.017 10 C -0.009 4.009 11 N -0.124 5.124 12 C -0.170 4.170 13 C -0.185 4.185 14 N -0.226 5.226 15 C -0.072 4.072 16 Cl 0.053 6.947 17 H 0.073 0.927 18 H 0.017 0.983 19 H 0.013 0.987 20 H 0.131 0.869 21 H 0.108 0.892 22 H 0.231 0.769 23 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 4.418 -8.486 -0.539 9.583 hybrid contribution 0.346 1.601 -0.170 1.646 sum 4.764 -6.886 -0.709 8.403 Atomic orbital electron populations 1.70105 1.08018 1.28077 1.50817 1.25961 0.95643 1.03489 0.94363 0.85452 0.78165 0.77768 0.79396 1.18715 1.21358 1.19076 1.21407 0.93922 0.91031 1.51699 0.90756 1.19236 0.94281 0.92289 0.95883 1.22252 0.94736 0.78890 1.04982 1.45886 1.40227 1.19212 1.07036 1.23489 1.06270 0.93357 0.93869 1.22858 1.04287 1.01512 0.89868 1.70140 1.22180 1.15640 1.14652 1.23235 1.04465 0.93604 0.85891 1.98385 1.97511 1.86288 1.12482 0.92676 0.98292 0.98657 0.86900 0.89174 0.76860 0.77332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.94 13.29 21.45 0.28 -54.65 14 2 C 0.00 0.23 5.46 84.66 0.46 0.69 14 3 Si 0.97 41.92 29.54 68.60 2.03 43.95 14 4 H -0.26 -10.76 7.11 99.48 0.71 -10.05 14 5 H -0.29 -12.47 7.11 99.48 0.71 -11.76 14 6 H -0.27 -11.05 7.11 99.48 0.71 -10.34 14 7 C -0.54 -28.39 9.11 25.60 0.23 -28.15 14 8 H 0.07 3.58 7.74 -2.91 -0.02 3.56 14 9 C 0.02 1.03 5.29 29.85 0.16 1.19 14 10 C 0.11 4.19 5.85 86.38 0.51 4.69 14 11 N -0.44 -15.81 2.76 -517.71 -1.43 -17.24 14 12 C -0.04 -1.05 11.57 83.05 0.96 -0.09 14 13 C -0.04 -1.11 11.87 83.50 0.99 -0.12 14 14 N -0.50 -18.65 11.26 -191.04 -2.15 -20.80 14 15 C 0.21 8.17 8.50 180.21 1.53 9.70 14 16 Cl 0.03 0.93 29.01 -2.72 -0.08 0.85 14 17 H 0.26 14.79 8.31 -92.71 -0.77 14.01 14 18 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 14 19 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 14 20 H 0.11 3.64 8.12 -2.39 -0.02 3.62 14 21 H 0.09 3.24 8.12 -2.39 -0.02 3.22 14 22 H 0.21 4.49 8.06 -2.91 -0.02 4.47 14 23 H 0.21 4.39 8.06 -2.91 -0.02 4.36 14 Total: -1.00 -63.97 229.50 4.70 -59.27 By element: Atomic # 1 Polarization: -0.50 SS G_CDS: 1.20 Total: 0.70 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: 4.84 Total: -12.09 kcal Atomic # 7 Polarization: -89.39 SS G_CDS: -3.30 Total: -92.69 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 17 Polarization: 0.93 SS G_CDS: -0.08 Total: 0.85 kcal Total: -63.97 4.70 -59.27 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108288509.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.964 kcal (2) G-P(sol) polarization free energy of solvation -63.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds