Wall clock time and date at job start Mon Mar 30 2020 02:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86798 * 120.00191 * 2 1 4 4 H 1.48505 * 109.47095 * 240.00089 * 3 2 1 5 5 H 1.48501 * 109.46877 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46993 * 119.99706 * 3 2 1 7 7 C 1.40140 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00255 * 180.02562 * 7 2 1 9 9 C 1.46125 * 120.00203 * 359.97438 * 7 2 1 10 10 O 1.21736 * 119.99774 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00452 * 179.97438 * 9 7 2 12 12 C 1.38402 * 120.00591 * 180.02562 * 11 9 7 13 13 N 1.31822 * 127.93271 * 180.02562 * 12 11 9 14 14 N 1.26398 * 117.47143 * 180.02562 * 13 12 11 15 15 N 1.28564 * 119.32358 * 359.97438 * 14 13 12 16 16 S 1.70154 * 105.26260 * 0.02562 * 15 14 13 17 17 H 0.97001 * 119.99763 * 0.02562 * 1 2 3 18 18 H 0.97003 * 119.99444 * 0.02562 * 11 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0941 1.6963 -1.2125 5 1 1.2753 2.7464 -0.0006 6 1 3.0940 1.6963 1.2125 7 6 2.0069 -1.2137 -0.0005 8 1 3.0869 -1.2137 -0.0001 9 6 1.2763 -2.4792 -0.0005 10 8 0.0590 -2.4791 -0.0005 11 7 1.9501 -3.6464 -0.0016 12 6 1.2581 -4.8450 -0.0021 13 7 1.7534 -6.0666 -0.0027 14 7 0.9332 -7.0283 -0.0036 15 7 -0.3282 -6.7800 -0.0035 16 16 -0.4507 -5.0829 -0.0027 17 1 -0.4850 0.8401 -0.0004 18 1 2.9201 -3.6463 -0.0020 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127584824.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:24 Heat of formation + Delta-G solvation = 42.935854 kcal Electronic energy + Delta-G solvation = -10301.968255 eV Core-core repulsion = 8075.456553 eV Total energy + Delta-G solvation = -2226.511703 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 200.011 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -40.58350 -38.46552 -34.40156 -33.01289 -31.46684 -27.58712 -25.91431 -21.80307 -20.91678 -19.10272 -17.51400 -16.84406 -15.88101 -15.67117 -14.50431 -13.50796 -13.37280 -13.01940 -11.98650 -11.76693 -11.43874 -11.15127 -10.93681 -10.74198 -10.49322 -9.67652 -9.58391 -9.30017 -8.47882 -8.22949 -6.81080 -5.31873 0.70907 1.24522 2.14615 2.67941 2.89656 2.93138 2.96707 3.42793 3.83611 3.94585 5.07479 5.08475 5.45341 6.81017 6.89771 7.02776 7.58622 8.33077 8.43610 9.08131 9.63039 10.07992 Molecular weight = 200.01amu Principal moments of inertia in cm(-1) A = 0.100601 B = 0.009511 C = 0.008716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.260192 B = 2943.148007 C = 3211.566240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.082 3.918 3 Si 0.926 3.074 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.509 4.509 8 H 0.085 0.915 9 C 0.515 3.485 10 O -0.533 6.533 11 N -0.601 5.601 12 C 0.276 3.724 13 N -0.379 5.379 14 N -0.006 5.006 15 N -0.316 5.316 16 S 0.305 5.695 17 H 0.282 0.718 18 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.812 -0.063 -0.001 2.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.369 5.369 2 C -0.143 4.143 3 Si 0.749 3.251 4 H -0.187 1.187 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.545 4.545 8 H 0.103 0.897 9 C 0.324 3.676 10 O -0.412 6.412 11 N -0.250 5.250 12 C -0.100 4.100 13 N -0.246 5.246 14 N -0.003 5.003 15 N -0.307 5.307 16 S 0.425 5.575 17 H 0.093 0.907 18 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 1.042 -0.802 -0.001 1.315 hybrid contribution 1.614 1.328 0.001 2.090 sum 2.656 0.525 0.000 2.708 Atomic orbital electron populations 1.69917 1.07379 1.29233 1.30415 1.25845 0.94972 1.01050 0.92395 0.86088 0.79713 0.79235 0.80044 1.18693 1.19985 1.18691 1.20748 0.94352 0.87386 1.52017 0.89695 1.19017 0.87963 0.81459 0.79132 1.90670 1.13202 1.82876 1.54405 1.44213 1.11264 1.00611 1.68926 1.27239 0.97677 0.91289 0.93811 1.72594 1.29268 0.93916 1.28822 1.75287 0.94973 1.22395 1.07621 1.82495 1.12294 1.08313 1.27627 1.86492 1.04327 1.02835 1.63848 0.90692 0.74590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -19.03 11.82 55.56 0.66 -18.37 13 2 C 0.08 1.92 5.50 -17.35 -0.10 1.83 13 3 Si 0.93 17.11 29.56 -169.99 -5.02 12.08 13 4 H -0.26 -4.74 7.11 56.52 0.40 -4.34 13 5 H -0.28 -5.01 7.11 56.52 0.40 -4.61 13 6 H -0.26 -4.74 7.11 56.52 0.40 -4.33 13 7 C -0.51 -12.03 9.53 -35.71 -0.34 -12.37 13 8 H 0.08 1.76 7.85 -52.49 -0.41 1.35 13 9 C 0.51 12.52 7.70 -13.10 -0.10 12.42 13 10 O -0.53 -14.48 12.80 5.16 0.07 -14.41 13 11 N -0.60 -12.30 5.38 -13.73 -0.07 -12.37 13 12 C 0.28 5.77 8.58 -86.11 -0.74 5.03 13 13 N -0.38 -7.86 11.70 30.40 0.36 -7.50 13 14 N -0.01 -0.14 12.76 60.35 0.77 0.64 13 15 N -0.32 -6.47 13.44 60.35 0.81 -5.66 13 16 S 0.31 6.34 21.38 -107.50 -2.30 4.05 13 17 H 0.28 6.51 8.29 -40.82 -0.34 6.18 13 18 H 0.42 7.11 8.80 -40.82 -0.36 6.75 13 LS Contribution 196.41 15.07 2.96 2.96 Total: -1.00 -27.73 196.41 -2.96 -30.69 By element: Atomic # 1 Polarization: 0.90 SS G_CDS: 0.10 Total: 1.00 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: -1.28 Total: 6.91 kcal Atomic # 7 Polarization: -45.79 SS G_CDS: 2.52 Total: -43.27 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.07 Total: -14.41 kcal Atomic # 14 Polarization: 17.11 SS G_CDS: -5.02 Total: 12.08 kcal Atomic # 16 Polarization: 6.34 SS G_CDS: -2.30 Total: 4.05 kcal Total LS contribution 2.96 Total: 2.96 kcal Total: -27.73 -2.96 -30.69 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127584824.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.627 kcal (2) G-P(sol) polarization free energy of solvation -27.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds