Wall clock time and date at job start Mon Mar 30 2020 02:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86798 * 120.00191 * 2 1 4 4 H 1.48505 * 109.47095 * 240.00089 * 3 2 1 5 5 H 1.48501 * 109.46877 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.46993 * 119.99706 * 3 2 1 7 7 C 1.40140 * 119.99831 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00255 * 180.02562 * 7 2 1 9 9 C 1.46125 * 120.00203 * 359.97438 * 7 2 1 10 10 O 1.21736 * 119.99774 * 0.02562 * 9 7 2 11 11 N 1.34773 * 120.00452 * 179.97438 * 9 7 2 12 12 C 1.38402 * 120.00591 * 180.02562 * 11 9 7 13 13 N 1.31822 * 127.93271 * 180.02562 * 12 11 9 14 14 N 1.26398 * 117.47143 * 180.02562 * 13 12 11 15 15 N 1.28564 * 119.32358 * 359.97438 * 14 13 12 16 16 S 1.70154 * 105.26260 * 0.02562 * 15 14 13 17 17 H 0.97001 * 119.99763 * 0.02562 * 1 2 3 18 18 H 0.97003 * 119.99444 * 0.02562 * 11 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 3.0941 1.6963 -1.2125 5 1 1.2753 2.7464 -0.0006 6 1 3.0940 1.6963 1.2125 7 6 2.0069 -1.2137 -0.0005 8 1 3.0869 -1.2137 -0.0001 9 6 1.2763 -2.4792 -0.0005 10 8 0.0590 -2.4791 -0.0005 11 7 1.9501 -3.6464 -0.0016 12 6 1.2581 -4.8450 -0.0021 13 7 1.7534 -6.0666 -0.0027 14 7 0.9332 -7.0283 -0.0036 15 7 -0.3282 -6.7800 -0.0035 16 16 -0.4507 -5.0829 -0.0027 17 1 -0.4850 0.8401 -0.0004 18 1 2.9201 -3.6463 -0.0020 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127584824.mol2 18 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:26:23 Heat of formation + Delta-G solvation = 22.534583 kcal Electronic energy + Delta-G solvation = -10302.852921 eV Core-core repulsion = 8075.456553 eV Total energy + Delta-G solvation = -2227.396368 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 200.011 amu Computer time = 0.08 seconds Orbital eigenvalues (eV) -42.26551 -40.27390 -36.17391 -34.83897 -33.16972 -29.37716 -27.64315 -23.55247 -22.63617 -20.81571 -19.26894 -18.55534 -17.67481 -17.35913 -16.14187 -15.31529 -15.06035 -14.72087 -13.66319 -13.42121 -12.99999 -12.94908 -12.61090 -12.29570 -12.05509 -11.35881 -11.26387 -11.02353 -10.36445 -9.94871 -8.57478 -7.17400 -0.98162 -0.42036 0.47165 0.98807 1.42961 1.44749 1.58606 1.79342 2.19225 2.25855 3.26835 3.44144 3.76522 5.10619 5.18976 5.31319 5.85472 6.55539 6.69827 7.39747 7.79861 8.35151 Molecular weight = 200.01amu Principal moments of inertia in cm(-1) A = 0.100601 B = 0.009511 C = 0.008716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 278.260192 B = 2943.148007 C = 3211.566240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.792 5.792 2 C 0.033 3.967 3 Si 1.006 2.994 4 H -0.252 1.252 5 H -0.275 1.275 6 H -0.252 1.252 7 C -0.526 4.526 8 H 0.112 0.888 9 C 0.503 3.497 10 O -0.569 6.569 11 N -0.589 5.589 12 C 0.270 3.730 13 N -0.373 5.373 14 N -0.011 5.011 15 N -0.309 5.309 16 S 0.304 5.696 17 H 0.287 0.713 18 H 0.432 0.568 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.152 0.721 -0.001 4.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.187 4.187 3 Si 0.825 3.175 4 H -0.176 1.176 5 H -0.199 1.199 6 H -0.176 1.176 7 C -0.561 4.561 8 H 0.130 0.870 9 C 0.313 3.687 10 O -0.451 6.451 11 N -0.240 5.240 12 C -0.106 4.106 13 N -0.240 5.240 14 N -0.007 5.007 15 N -0.301 5.301 16 S 0.424 5.576 17 H 0.098 0.902 18 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 2.419 -0.064 -0.001 2.420 hybrid contribution 1.182 1.009 0.001 1.554 sum 3.600 0.946 0.000 3.723 Atomic orbital electron populations 1.70042 1.09530 1.30670 1.31722 1.27025 0.95656 1.04951 0.91041 0.84893 0.78160 0.73830 0.80634 1.17570 1.19929 1.17562 1.21332 0.95844 0.87406 1.51551 0.87023 1.19354 0.87775 0.82574 0.78957 1.90643 1.14719 1.83770 1.55994 1.43846 1.11941 0.99710 1.68502 1.27296 0.97719 0.91471 0.94076 1.72593 1.29107 0.93694 1.28590 1.75282 0.95084 1.22468 1.07880 1.82489 1.12180 1.08113 1.27281 1.86570 1.04643 1.02761 1.63648 0.90203 0.72694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -40.67 11.82 21.85 0.26 -40.41 13 2 C 0.03 1.52 5.50 85.33 0.47 1.99 13 3 Si 1.01 33.55 29.56 68.60 2.03 35.58 13 4 H -0.25 -7.92 7.11 99.48 0.71 -7.22 13 5 H -0.27 -9.03 7.11 99.48 0.71 -8.32 13 6 H -0.25 -7.92 7.11 99.48 0.71 -7.21 13 7 C -0.53 -24.17 9.53 24.78 0.24 -23.93 13 8 H 0.11 4.35 7.85 -2.91 -0.02 4.33 13 9 C 0.50 24.25 7.70 86.29 0.66 24.91 13 10 O -0.57 -31.19 12.80 -4.46 -0.06 -31.25 13 11 N -0.59 -23.51 5.38 -315.56 -1.70 -25.20 13 12 C 0.27 11.07 8.58 178.77 1.53 12.60 13 13 N -0.37 -14.97 11.70 -57.74 -0.68 -15.64 13 14 N -0.01 -0.44 12.76 37.02 0.47 0.03 13 15 N -0.31 -12.36 13.44 37.02 0.50 -11.87 13 16 S 0.30 12.50 21.38 -56.49 -1.21 11.29 13 17 H 0.29 13.34 8.29 -92.71 -0.77 12.57 13 18 H 0.43 14.05 8.80 -92.71 -0.82 13.24 13 Total: -1.00 -57.54 196.41 3.04 -54.51 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 0.51 Total: 7.39 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: 2.90 Total: 15.57 kcal Atomic # 7 Polarization: -91.95 SS G_CDS: -1.14 Total: -93.09 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.06 Total: -31.25 kcal Atomic # 14 Polarization: 33.55 SS G_CDS: 2.03 Total: 35.58 kcal Atomic # 16 Polarization: 12.50 SS G_CDS: -1.21 Total: 11.29 kcal Total: -57.54 3.04 -54.51 kcal The number of atoms in the molecule is 18 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127584824.mol2 18 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.041 kcal (2) G-P(sol) polarization free energy of solvation -57.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.08 seconds