Wall clock time and date at job start Mon Mar 30 2020 01:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46882 * 2 1 4 4 C 1.50703 * 109.47127 * 119.99590 * 2 1 3 5 5 H 1.07996 * 119.99933 * 120.00135 * 4 2 1 6 6 C 1.37876 * 119.99913 * 300.00133 * 4 2 1 7 7 N 1.31511 * 119.99767 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00292 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47149 * 89.99326 * 8 6 4 10 10 H 1.48499 * 109.47167 * 209.99962 * 8 6 4 11 11 H 1.48505 * 109.46979 * 329.99894 * 8 6 4 12 12 N 1.46900 * 109.47583 * 239.99974 * 2 1 3 13 13 C 1.46894 * 111.00528 * 116.41399 * 12 2 1 14 14 C 1.53002 * 112.84988 * 66.05451 * 13 12 2 15 15 O 1.42900 * 109.46662 * 47.44084 * 14 13 12 16 16 C 1.53784 * 113.61316 * 294.86130 * 13 12 2 17 17 C 1.53781 * 87.17401 * 270.75261 * 16 13 12 18 18 C 1.53776 * 113.69451 * 197.32600 * 13 12 2 19 19 H 1.08995 * 109.47475 * 305.56614 * 1 2 3 20 20 H 1.09007 * 109.47444 * 65.56929 * 1 2 3 21 21 H 1.09005 * 109.47340 * 185.56404 * 1 2 3 22 22 H 0.97001 * 120.00216 * 180.02562 * 7 6 4 23 23 H 1.00903 * 111.00043 * 240.37334 * 12 2 1 24 24 H 1.09000 * 109.47326 * 167.44425 * 14 13 12 25 25 H 1.09000 * 109.46635 * 287.44621 * 14 13 12 26 26 H 0.96705 * 113.99648 * 184.97106 * 15 14 13 27 27 H 1.08996 * 113.61429 * 25.35014 * 16 13 12 28 28 H 1.09001 * 113.61251 * 156.16785 * 16 13 12 29 29 H 1.09005 * 113.61112 * 89.15631 * 17 16 13 30 30 H 1.08999 * 113.61750 * 220.06073 * 17 16 13 31 31 H 1.09005 * 113.61396 * 203.67735 * 18 13 12 32 32 H 1.08999 * 113.61475 * 334.49588 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8588 3.5566 8 14 0.6246 1.2791 2.6541 9 1 -0.8029 0.8727 2.6996 10 1 0.9757 1.9953 3.9067 11 1 0.8469 2.1765 1.4919 12 7 2.0197 -0.6925 -1.1994 13 6 2.7704 0.2246 -2.0672 14 6 4.0700 0.7177 -1.4277 15 8 4.7813 -0.3930 -0.8777 16 6 1.9104 1.3520 -2.6624 17 6 1.6156 0.4038 -3.8367 18 6 2.9484 -0.2916 -3.5048 19 1 -0.3634 0.5977 0.8359 20 1 -0.3634 0.4251 -0.9357 21 1 -0.3634 -1.0228 0.0996 22 1 1.9033 -0.5276 4.4376 23 1 2.5793 -1.4945 -0.9507 24 1 4.6853 1.2047 -2.1843 25 1 3.8378 1.4289 -0.6351 26 1 5.5787 -0.1464 -0.3893 27 1 1.0315 1.5929 -2.0644 28 1 2.4834 2.2345 -2.9471 29 1 0.7420 -0.2285 -3.6785 30 1 1.6105 0.8994 -4.8075 31 1 3.8055 0.1409 -4.0210 32 1 2.9090 -1.3778 -3.5867 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129478170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:46 Heat of formation + Delta-G solvation = -25.008595 kcal Electronic energy + Delta-G solvation = -13670.073038 eV Core-core repulsion = 11438.494616 eV Total energy + Delta-G solvation = -2231.578423 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.27808 -35.60168 -34.63579 -31.77576 -29.06150 -26.71215 -25.33101 -24.86357 -21.99612 -20.10081 -18.13498 -16.88312 -16.64833 -15.38534 -14.99331 -14.75708 -13.89713 -13.33857 -13.12438 -12.72797 -12.11364 -12.08403 -11.87307 -11.40378 -11.18644 -10.91747 -10.73217 -10.36054 -10.12935 -9.92559 -9.81620 -9.47348 -9.26415 -8.96863 -8.55625 -7.36642 -6.05001 -4.03241 3.28823 3.37266 3.39761 4.41773 4.57872 4.92351 5.05237 5.21958 5.26560 5.43057 5.54247 5.77738 5.96752 5.98769 6.02747 6.10066 6.26335 6.42899 6.50089 6.57853 6.73268 6.75990 6.89517 7.00154 7.46105 7.64158 8.07945 8.16539 8.47386 8.69585 9.03357 9.58045 11.08226 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.040447 B = 0.013088 C = 0.011314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.094864 B = 2138.850101 C = 2474.243124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.182 3.818 3 H 0.015 0.985 4 C -0.519 4.519 5 H 0.078 0.922 6 C 0.069 3.931 7 N -0.901 5.901 8 Si 0.889 3.111 9 H -0.279 1.279 10 H -0.300 1.300 11 H -0.270 1.270 12 N -0.652 5.652 13 C 0.099 3.901 14 C 0.062 3.938 15 O -0.558 6.558 16 C -0.133 4.133 17 C -0.126 4.126 18 C -0.126 4.126 19 H 0.032 0.968 20 H 0.031 0.969 21 H 0.053 0.947 22 H 0.262 0.738 23 H 0.351 0.649 24 H 0.033 0.967 25 H 0.045 0.955 26 H 0.372 0.628 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.085 0.915 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.582 4.934 -11.368 12.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.073 3.927 3 H 0.032 0.968 4 C -0.558 4.558 5 H 0.096 0.904 6 C -0.132 4.132 7 N -0.539 5.539 8 Si 0.720 3.280 9 H -0.206 1.206 10 H -0.228 1.228 11 H -0.195 1.195 12 N -0.284 5.284 13 C 0.006 3.994 14 C -0.018 4.018 15 O -0.362 6.362 16 C -0.171 4.171 17 C -0.163 4.163 18 C -0.164 4.164 19 H 0.050 0.950 20 H 0.050 0.950 21 H 0.072 0.928 22 H 0.072 0.928 23 H 0.172 0.828 24 H 0.051 0.949 25 H 0.063 0.937 26 H 0.218 0.782 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.091 0.909 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.491 4.658 -11.796 12.692 hybrid contribution 0.710 1.338 1.178 1.919 sum 1.201 5.997 -10.618 12.253 Atomic orbital electron populations 1.22116 0.99001 1.00711 0.97586 1.19455 0.91274 0.93963 0.88012 0.96769 1.21475 1.31559 1.13671 0.89094 0.90393 1.24958 0.95738 0.96639 0.95892 1.69908 1.45832 1.40365 0.97841 0.86841 0.80891 0.83789 0.76480 1.20568 1.22756 1.19514 1.60618 1.39630 1.08777 1.19397 1.22051 0.90240 0.94449 0.92660 1.22779 0.93721 0.89056 0.96288 1.86463 1.42471 1.33427 1.73858 1.22995 1.00171 0.96096 0.97847 1.22665 0.98446 0.98483 0.96728 1.22967 0.97001 1.00874 0.95595 0.94998 0.95046 0.92770 0.92796 0.82831 0.94918 0.93722 0.78185 0.90718 0.90827 0.89615 0.92590 0.90922 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.83 37.15 0.33 -2.78 16 2 C 0.18 4.36 1.37 -68.87 -0.09 4.27 16 3 H 0.01 0.36 5.31 -51.93 -0.28 0.09 16 4 C -0.52 -14.65 9.19 -34.44 -0.32 -14.96 16 5 H 0.08 2.41 7.58 -52.49 -0.40 2.01 16 6 C 0.07 2.02 5.45 -17.82 -0.10 1.92 16 7 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 8 Si 0.89 22.39 24.32 -169.99 -4.13 18.25 16 9 H -0.28 -6.89 6.92 56.52 0.39 -6.50 16 10 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 11 H -0.27 -6.53 6.53 56.52 0.37 -6.16 16 12 N -0.65 -13.81 6.13 -93.44 -0.57 -14.39 16 13 C 0.10 1.76 0.68 -130.79 -0.09 1.67 16 14 C 0.06 1.08 6.18 37.16 0.23 1.31 16 15 O -0.56 -10.28 12.88 -35.23 -0.45 -10.74 16 16 C -0.13 -2.11 6.96 -25.92 -0.18 -2.29 16 17 C -0.13 -1.79 8.01 -25.83 -0.21 -2.00 16 18 C -0.13 -1.91 7.44 -25.83 -0.19 -2.10 16 19 H 0.03 0.74 3.43 -51.93 -0.18 0.57 16 20 H 0.03 0.63 7.23 -51.92 -0.38 0.26 16 21 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 22 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 23 H 0.35 8.01 7.17 -39.29 -0.28 7.73 16 24 H 0.03 0.48 7.91 -51.93 -0.41 0.07 16 25 H 0.04 0.85 7.27 -51.93 -0.38 0.47 16 26 H 0.37 5.35 9.12 45.56 0.42 5.76 16 27 H 0.07 1.30 6.48 -51.93 -0.34 0.97 16 28 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.97 7.94 -51.93 -0.41 0.56 16 32 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 250.38 15.07 3.77 3.77 Total: -1.00 -30.75 250.38 -5.15 -35.90 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -3.92 Total: 9.15 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -0.62 Total: -14.97 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.20 Total: -41.36 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: -0.45 Total: -10.74 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -4.13 Total: 18.25 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -30.75 -5.15 -35.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129478170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.890 kcal (2) G-P(sol) polarization free energy of solvation -30.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds