Wall clock time and date at job start Mon Mar 30 2020 01:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46882 * 2 1 4 4 C 1.50703 * 109.47127 * 119.99590 * 2 1 3 5 5 H 1.07996 * 119.99933 * 120.00135 * 4 2 1 6 6 C 1.37876 * 119.99913 * 300.00133 * 4 2 1 7 7 N 1.31511 * 119.99767 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 120.00292 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47149 * 89.99326 * 8 6 4 10 10 H 1.48499 * 109.47167 * 209.99962 * 8 6 4 11 11 H 1.48505 * 109.46979 * 329.99894 * 8 6 4 12 12 N 1.46900 * 109.47583 * 239.99974 * 2 1 3 13 13 C 1.46894 * 111.00528 * 116.41399 * 12 2 1 14 14 C 1.53002 * 112.84988 * 66.05451 * 13 12 2 15 15 O 1.42900 * 109.46662 * 47.44084 * 14 13 12 16 16 C 1.53784 * 113.61316 * 294.86130 * 13 12 2 17 17 C 1.53781 * 87.17401 * 270.75261 * 16 13 12 18 18 C 1.53776 * 113.69451 * 197.32600 * 13 12 2 19 19 H 1.08995 * 109.47475 * 305.56614 * 1 2 3 20 20 H 1.09007 * 109.47444 * 65.56929 * 1 2 3 21 21 H 1.09005 * 109.47340 * 185.56404 * 1 2 3 22 22 H 0.97001 * 120.00216 * 180.02562 * 7 6 4 23 23 H 1.00903 * 111.00043 * 240.37334 * 12 2 1 24 24 H 1.09000 * 109.47326 * 167.44425 * 14 13 12 25 25 H 1.09000 * 109.46635 * 287.44621 * 14 13 12 26 26 H 0.96705 * 113.99648 * 184.97106 * 15 14 13 27 27 H 1.08996 * 113.61429 * 25.35014 * 16 13 12 28 28 H 1.09001 * 113.61251 * 156.16785 * 16 13 12 29 29 H 1.09005 * 113.61112 * 89.15631 * 17 16 13 30 30 H 1.08999 * 113.61750 * 220.06073 * 17 16 13 31 31 H 1.09005 * 113.61396 * 203.67735 * 18 13 12 32 32 H 1.08999 * 113.61475 * 334.49588 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 2.1380 -0.8588 3.5566 8 14 0.6246 1.2791 2.6541 9 1 -0.8029 0.8727 2.6996 10 1 0.9757 1.9953 3.9067 11 1 0.8469 2.1765 1.4919 12 7 2.0197 -0.6925 -1.1994 13 6 2.7704 0.2246 -2.0672 14 6 4.0700 0.7177 -1.4277 15 8 4.7813 -0.3930 -0.8777 16 6 1.9104 1.3520 -2.6624 17 6 1.6156 0.4038 -3.8367 18 6 2.9484 -0.2916 -3.5048 19 1 -0.3634 0.5977 0.8359 20 1 -0.3634 0.4251 -0.9357 21 1 -0.3634 -1.0228 0.0996 22 1 1.9033 -0.5276 4.4376 23 1 2.5793 -1.4945 -0.9507 24 1 4.6853 1.2047 -2.1843 25 1 3.8378 1.4289 -0.6351 26 1 5.5787 -0.1464 -0.3893 27 1 1.0315 1.5929 -2.0644 28 1 2.4834 2.2345 -2.9471 29 1 0.7420 -0.2285 -3.6785 30 1 1.6105 0.8994 -4.8075 31 1 3.8055 0.1409 -4.0210 32 1 2.9090 -1.3778 -3.5867 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129478170.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:46 Heat of formation + Delta-G solvation = -50.149611 kcal Electronic energy + Delta-G solvation = -13671.163235 eV Core-core repulsion = 11438.494616 eV Total energy + Delta-G solvation = -2232.668619 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.63739 -36.98887 -36.48787 -33.86997 -30.72349 -28.15888 -27.08158 -26.46619 -23.32813 -21.90203 -19.64129 -18.76889 -18.15758 -17.06546 -16.72583 -16.11069 -15.27030 -15.05010 -14.85691 -14.62538 -13.85856 -13.66037 -13.29029 -13.13137 -12.84426 -12.57919 -12.24039 -12.04095 -11.69767 -11.46939 -11.24463 -11.09974 -11.03315 -10.75084 -10.66342 -9.05306 -8.29515 -6.32388 1.29255 1.32111 1.43024 2.30315 3.05108 3.23398 3.55155 3.81023 4.03737 4.07627 4.27127 4.45609 4.57376 4.61162 4.68336 4.80440 4.85963 4.90061 5.02819 5.06312 5.18464 5.22634 5.49549 5.55252 5.57993 5.66995 6.14196 6.49816 6.70793 6.86127 6.95333 7.33298 8.87053 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.040447 B = 0.013088 C = 0.011314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.094864 B = 2138.850101 C = 2474.243124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.191 3.809 3 H 0.011 0.989 4 C -0.519 4.519 5 H 0.035 0.965 6 C 0.013 3.987 7 N -0.948 5.948 8 Si 0.950 3.050 9 H -0.268 1.268 10 H -0.299 1.299 11 H -0.251 1.251 12 N -0.651 5.651 13 C 0.073 3.927 14 C 0.061 3.939 15 O -0.582 6.582 16 C -0.131 4.131 17 C -0.115 4.115 18 C -0.117 4.117 19 H 0.028 0.972 20 H 0.059 0.941 21 H 0.044 0.956 22 H 0.264 0.736 23 H 0.337 0.663 24 H 0.068 0.932 25 H 0.023 0.977 26 H 0.386 0.614 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.003 6.785 -13.429 15.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.082 3.918 3 H 0.029 0.971 4 C -0.558 4.558 5 H 0.053 0.947 6 C -0.185 4.185 7 N -0.589 5.589 8 Si 0.778 3.222 9 H -0.194 1.194 10 H -0.227 1.227 11 H -0.175 1.175 12 N -0.281 5.281 13 C -0.020 4.020 14 C -0.019 4.019 15 O -0.388 6.388 16 C -0.168 4.168 17 C -0.152 4.152 18 C -0.155 4.155 19 H 0.047 0.953 20 H 0.078 0.922 21 H 0.063 0.937 22 H 0.073 0.927 23 H 0.155 0.845 24 H 0.086 0.914 25 H 0.041 0.959 26 H 0.234 0.766 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.084 6.519 -13.887 15.341 hybrid contribution 0.995 0.684 1.788 2.157 sum 0.911 7.203 -12.099 14.110 Atomic orbital electron populations 1.22038 0.97750 1.00369 0.98928 1.19266 0.92144 0.93130 0.87302 0.97143 1.21718 1.30493 1.12398 0.91191 0.94694 1.25798 0.97284 0.99925 0.95456 1.70057 1.47821 1.42519 0.98503 0.85839 0.79329 0.80117 0.76958 1.19360 1.22716 1.17526 1.60622 1.40356 1.08922 1.18175 1.22443 0.90677 0.95404 0.93454 1.22849 0.94207 0.88385 0.96414 1.86429 1.43483 1.34563 1.74358 1.23064 0.99326 0.96583 0.97874 1.22604 0.97299 0.97661 0.97667 1.22968 0.98624 1.00516 0.93388 0.95347 0.92209 0.93690 0.92695 0.84460 0.91404 0.95885 0.76557 0.92395 0.88215 0.90877 0.89483 0.88451 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.85 8.83 71.98 0.64 -5.21 16 2 C 0.19 9.07 1.37 44.17 0.06 9.13 16 3 H 0.01 0.52 5.31 -2.39 -0.01 0.51 16 4 C -0.52 -29.98 9.19 25.60 0.24 -29.74 16 5 H 0.03 2.27 7.58 -2.91 -0.02 2.24 16 6 C 0.01 0.74 5.45 84.65 0.46 1.21 16 7 N -0.95 -59.97 13.96 21.45 0.30 -59.67 16 8 Si 0.95 45.78 24.32 68.60 1.67 47.45 16 9 H -0.27 -12.36 6.92 99.48 0.69 -11.67 16 10 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 11 H -0.25 -11.25 6.53 99.48 0.65 -10.60 16 12 N -0.65 -27.29 6.13 -449.52 -2.76 -30.04 16 13 C 0.07 2.44 0.68 4.06 0.00 2.45 16 14 C 0.06 2.03 6.18 71.98 0.44 2.48 16 15 O -0.58 -21.32 12.88 -148.98 -1.92 -23.24 16 16 C -0.13 -3.70 6.96 31.12 0.22 -3.49 16 17 C -0.12 -2.85 8.01 31.18 0.25 -2.60 16 18 C -0.12 -3.18 7.44 31.18 0.23 -2.94 16 19 H 0.03 1.25 3.43 -2.39 -0.01 1.24 16 20 H 0.06 2.27 7.23 -2.38 -0.02 2.25 16 21 H 0.04 2.02 8.14 -2.38 -0.02 2.00 16 22 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 23 H 0.34 15.72 7.17 -89.69 -0.64 15.08 16 24 H 0.07 1.77 7.91 -2.39 -0.02 1.75 16 25 H 0.02 0.85 7.27 -2.39 -0.02 0.83 16 26 H 0.39 11.09 9.12 -74.05 -0.68 10.42 16 27 H 0.06 1.84 6.48 -2.39 -0.02 1.82 16 28 H 0.10 2.30 8.10 -2.39 -0.02 2.28 16 29 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.10 2.18 7.94 -2.38 -0.02 2.16 16 32 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -66.85 250.38 -0.44 -67.29 By element: Atomic # 1 Polarization: 27.22 SS G_CDS: -0.27 Total: 26.94 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 2.54 Total: -28.73 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -2.46 Total: -89.71 kcal Atomic # 8 Polarization: -21.32 SS G_CDS: -1.92 Total: -23.24 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.45 kcal Total: -66.85 -0.44 -67.29 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129478170.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.138 kcal (2) G-P(sol) polarization free energy of solvation -66.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds