Wall clock time and date at job start Mon Mar 30 2020 01:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09000 * 109.46837 * 2 1 4 4 C 1.50693 * 109.46915 * 240.00078 * 2 1 3 5 5 H 1.08005 * 119.99854 * 239.99900 * 4 2 1 6 6 C 1.37878 * 120.00083 * 59.99957 * 4 2 1 7 7 N 1.31511 * 119.99935 * 0.02562 * 6 4 2 8 8 Si 1.86802 * 119.99899 * 180.02562 * 6 4 2 9 9 H 1.48508 * 109.47177 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47276 * 120.00245 * 8 6 4 11 11 H 1.48507 * 109.47088 * 240.00288 * 8 6 4 12 12 N 1.46901 * 109.47021 * 120.00193 * 2 1 3 13 13 C 1.46905 * 110.99870 * 274.99736 * 12 2 1 14 14 C 1.52993 * 109.47039 * 180.02562 * 13 12 2 15 15 C 1.52996 * 115.55257 * 34.32883 * 14 13 12 16 16 O 1.42900 * 109.46967 * 325.58572 * 15 14 13 17 17 C 1.53006 * 117.49754 * 248.62374 * 14 13 12 18 18 C 1.53002 * 59.99966 * 252.50961 * 17 14 13 19 19 H 1.08996 * 109.47234 * 180.02562 * 1 2 3 20 20 H 1.09007 * 109.47106 * 300.00284 * 1 2 3 21 21 H 1.08993 * 109.47190 * 59.99909 * 1 2 3 22 22 H 0.97003 * 119.99872 * 179.97438 * 7 6 4 23 23 H 1.00901 * 111.00067 * 38.94911 * 12 2 1 24 24 H 1.09001 * 109.46798 * 300.00327 * 13 12 2 25 25 H 1.08998 * 109.46961 * 60.00043 * 13 12 2 26 26 H 1.09004 * 109.47305 * 85.58338 * 15 14 13 27 27 H 1.09003 * 109.47633 * 205.58514 * 15 14 13 28 28 H 0.96705 * 113.99703 * 180.02562 * 16 15 14 29 29 H 1.08994 * 117.49971 * 359.97438 * 17 14 13 30 30 H 1.08998 * 117.50066 * 145.02214 * 17 14 13 31 31 H 1.09002 * 117.50051 * 252.50958 * 18 17 14 32 32 H 1.09000 * 117.49984 * 107.48591 * 18 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3212 -1.1203 -4.0079 9 1 3.1464 -2.2871 -3.6037 10 1 1.1659 -1.5866 -4.8160 11 1 3.1466 -0.1874 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5962 -0.5329 3.5741 15 6 3.6324 -1.6227 3.2922 16 8 3.3422 -2.2428 2.0379 17 6 1.6103 -0.7741 4.7191 18 6 2.7338 0.2519 4.8804 19 1 -0.3633 -1.0276 0.0005 20 1 -0.3634 0.5139 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 0.7095 1.1619 -3.4844 23 1 1.4495 -1.4979 1.4100 24 1 2.7589 1.0462 2.1182 25 1 1.0871 0.6163 2.5525 26 1 4.6269 -1.1779 3.2561 27 1 3.5976 -2.3709 4.0842 28 1 3.9602 -2.9457 1.7944 29 1 0.5959 -0.3942 4.5981 30 1 1.6997 -1.7094 5.2716 31 1 3.5624 -0.0084 5.5390 32 1 2.4584 1.3064 4.8653 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131776439.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:04 Heat of formation + Delta-G solvation = -10.244518 kcal Electronic energy + Delta-G solvation = -13201.791799 eV Core-core repulsion = 10970.853595 eV Total energy + Delta-G solvation = -2230.938204 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.44293 -35.21200 -35.09647 -32.09687 -28.63239 -26.31532 -25.03610 -23.98552 -22.30430 -19.95275 -18.85179 -16.76384 -16.02315 -15.24229 -14.62249 -14.46261 -13.72164 -13.36190 -12.98417 -12.68680 -12.22652 -11.67115 -11.43565 -11.32564 -10.90269 -10.76013 -10.54771 -10.29494 -10.15584 -9.94602 -9.81446 -9.51138 -9.08607 -8.79044 -8.23099 -6.72011 -5.84776 -3.86012 3.39135 3.46271 3.52114 3.87889 4.54799 4.61575 4.89038 5.06092 5.42970 5.46560 5.62693 5.68172 5.72939 5.92555 5.97072 6.05270 6.23760 6.34320 6.45487 6.60472 6.84002 6.99686 7.28777 7.58805 7.90303 8.08403 8.35898 8.49837 8.85253 8.95174 9.24510 9.78896 11.22651 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.053238 B = 0.008987 C = 0.008108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.816593 B = 3114.768176 C = 3452.604741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.206 3.794 3 H 0.027 0.973 4 C -0.480 4.480 5 H 0.064 0.936 6 C 0.049 3.951 7 N -0.902 5.902 8 Si 0.895 3.105 9 H -0.273 1.273 10 H -0.288 1.288 11 H -0.287 1.287 12 N -0.644 5.644 13 C 0.102 3.898 14 C -0.117 4.117 15 C 0.123 3.877 16 O -0.510 6.510 17 C -0.179 4.179 18 C -0.173 4.173 19 H 0.026 0.974 20 H 0.001 0.999 21 H 0.086 0.914 22 H 0.256 0.744 23 H 0.331 0.669 24 H 0.061 0.939 25 H 0.012 0.988 26 H 0.038 0.962 27 H 0.027 0.973 28 H 0.352 0.648 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.167 -3.337 12.063 12.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.098 3.902 3 H 0.045 0.955 4 C -0.519 4.519 5 H 0.082 0.918 6 C -0.150 4.150 7 N -0.543 5.543 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.214 1.214 11 H -0.214 1.214 12 N -0.276 5.276 13 C -0.028 4.028 14 C -0.117 4.117 15 C 0.044 3.956 16 O -0.312 6.312 17 C -0.216 4.216 18 C -0.211 4.211 19 H 0.045 0.955 20 H 0.020 0.980 21 H 0.105 0.895 22 H 0.066 0.934 23 H 0.149 0.851 24 H 0.079 0.921 25 H 0.030 0.970 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.197 0.803 29 H 0.110 0.890 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.269 -2.720 11.753 12.499 hybrid contribution -0.284 -0.573 -0.521 0.825 sum 2.985 -3.294 11.232 12.079 Atomic orbital electron populations 1.22445 1.01304 0.98953 1.00098 1.19223 0.89137 0.94274 0.87544 0.95478 1.21248 1.29204 1.12017 0.89478 0.91758 1.24981 0.95673 0.95347 0.98995 1.69908 1.37999 1.23509 1.22885 0.86484 0.78394 0.79634 0.83086 1.19800 1.21412 1.21366 1.60600 1.57865 1.07337 1.01781 1.21335 0.96950 0.95030 0.89482 1.21693 0.99989 0.99599 0.90424 1.21309 0.95317 0.92282 0.86710 1.87226 1.54634 1.53588 1.35726 1.23151 0.95436 1.00281 1.02720 1.22955 1.00971 0.97605 0.99575 0.95507 0.97981 0.89526 0.93394 0.85066 0.92076 0.96989 0.94405 0.95541 0.80323 0.89016 0.89201 0.89072 0.88700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.30 8.94 37.16 0.33 -3.96 16 2 C 0.21 5.46 2.57 -68.87 -0.18 5.28 16 3 H 0.03 0.79 7.80 -51.93 -0.40 0.39 16 4 C -0.48 -13.81 8.84 -34.44 -0.30 -14.12 16 5 H 0.06 1.87 7.81 -52.48 -0.41 1.46 16 6 C 0.05 1.42 5.30 -17.82 -0.09 1.32 16 7 N -0.90 -26.79 11.32 55.43 0.63 -26.16 16 8 Si 0.90 22.16 29.54 -169.99 -5.02 17.13 16 9 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 12 N -0.64 -14.52 3.58 -107.95 -0.39 -14.90 16 13 C 0.10 1.99 5.62 -3.82 -0.02 1.97 16 14 C -0.12 -1.81 2.46 -154.51 -0.38 -2.19 16 15 C 0.12 1.80 7.18 37.16 0.27 2.07 16 16 O -0.51 -8.70 9.71 -35.23 -0.34 -9.04 16 17 C -0.18 -2.37 9.82 -26.73 -0.26 -2.64 16 18 C -0.17 -2.18 9.97 -26.73 -0.27 -2.45 16 19 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 20 H 0.00 0.03 7.45 -51.92 -0.39 -0.36 16 21 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 22 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 23 H 0.33 7.45 7.47 -39.29 -0.29 7.15 16 24 H 0.06 1.24 8.06 -51.93 -0.42 0.82 16 25 H 0.01 0.24 7.19 -51.93 -0.37 -0.13 16 26 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.03 0.33 7.90 -51.93 -0.41 -0.08 16 28 H 0.35 4.59 9.12 45.56 0.42 5.01 16 29 H 0.09 1.23 8.05 -51.93 -0.42 0.82 16 30 H 0.09 1.07 8.05 -51.93 -0.42 0.65 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 262.02 15.07 3.95 3.95 Total: -1.00 -30.62 262.02 -6.34 -36.96 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -4.26 Total: 6.77 kcal Atomic # 6 Polarization: -13.81 SS G_CDS: -0.91 Total: -14.72 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: 0.24 Total: -41.06 kcal Atomic # 8 Polarization: -8.70 SS G_CDS: -0.34 Total: -9.04 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -30.62 -6.34 -36.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131776439.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.720 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds