Wall clock time and date at job start Mon Mar 30 2020 01:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46785 * 2 1 4 4 C 1.50697 * 109.47153 * 120.00263 * 2 1 3 5 5 H 1.08004 * 119.99456 * 120.00037 * 4 2 1 6 6 C 1.37871 * 120.00169 * 300.00250 * 4 2 1 7 7 N 1.31509 * 120.00239 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99963 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47587 * 89.99818 * 8 6 4 10 10 H 1.48500 * 109.47192 * 209.99542 * 8 6 4 11 11 H 1.48498 * 109.47051 * 329.99541 * 8 6 4 12 12 N 1.46898 * 109.47030 * 240.00667 * 2 1 3 13 13 O 1.46300 * 111.00309 * 89.99916 * 12 2 1 14 14 C 1.42901 * 114.00231 * 179.97438 * 13 12 2 15 15 C 1.55238 * 110.46638 * 269.80780 * 14 13 12 16 16 C 1.54894 * 102.58338 * 203.39157 * 15 14 13 17 17 C 1.54266 * 104.31305 * 37.93170 * 16 15 14 18 18 C 1.53869 * 106.60031 * 336.32486 * 17 16 15 19 19 H 1.09001 * 109.47515 * 59.99789 * 1 2 3 20 20 H 1.08999 * 109.46997 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47111 * 299.99348 * 1 2 3 22 22 H 0.97002 * 120.00359 * 180.02562 * 7 6 4 23 23 H 1.00901 * 110.99933 * 326.04194 * 12 2 1 24 24 H 1.09007 * 110.43106 * 32.45837 * 14 13 12 25 25 H 1.08996 * 110.89448 * 85.10721 * 15 14 13 26 26 H 1.08993 * 110.76342 * 321.62387 * 15 14 13 27 27 H 1.09002 * 110.48891 * 279.18596 * 16 15 14 28 28 H 1.08998 * 110.48494 * 156.67683 * 16 15 14 29 29 H 1.09001 * 110.03084 * 95.60669 * 17 16 15 30 30 H 1.08996 * 110.03108 * 216.98559 * 17 16 15 31 31 H 1.08999 * 110.04012 * 119.28327 * 18 17 16 32 32 H 1.09006 * 110.02998 * 240.67078 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8300 2.6035 8 14 2.3225 -1.1198 4.0078 9 1 3.6305 -0.5443 4.4118 10 1 1.3445 -0.9493 5.1122 11 1 2.4880 -2.5656 3.7119 12 7 2.0196 -0.6923 -1.1995 13 8 2.1944 0.2434 -2.3105 14 6 2.6706 -0.3643 -3.5129 15 6 4.2224 -0.3480 -3.5517 16 6 4.5231 -0.4462 -5.0680 17 6 3.4295 0.4170 -5.7304 18 6 2.2517 0.4691 -4.7417 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 0.7095 1.1615 3.4845 23 1 1.4035 -1.4487 -1.4573 24 1 2.2958 -1.3844 -3.5980 25 1 4.6336 -1.2060 -3.0200 26 1 4.6094 0.5843 -3.1407 27 1 4.4496 -1.4801 -5.4054 28 1 5.5120 -0.0437 -5.2876 29 1 3.8077 1.4227 -5.9138 30 1 3.1112 -0.0387 -6.6680 31 1 2.0582 1.5000 -4.4452 32 1 1.3608 0.0389 -5.1993 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000135117415.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:20 Heat of formation + Delta-G solvation = -20.560797 kcal Electronic energy + Delta-G solvation = -12882.086023 eV Core-core repulsion = 10650.700471 eV Total energy + Delta-G solvation = -2231.385552 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.03729 -35.55194 -33.71364 -31.20763 -28.51156 -27.51715 -25.92798 -25.13739 -20.52204 -20.33849 -19.85907 -16.95265 -16.05853 -15.35811 -14.81396 -14.47425 -13.76952 -13.31288 -13.09529 -12.62073 -11.96344 -11.76208 -11.50519 -11.09691 -11.08421 -10.92898 -10.88450 -10.73362 -10.38510 -10.31289 -10.16209 -9.99408 -9.56669 -9.02611 -8.41047 -7.43281 -6.04668 -4.09224 3.31458 3.36636 3.39815 3.72387 4.45548 4.83137 4.84176 5.01220 5.27770 5.53461 5.64211 5.71139 5.76236 5.78799 5.97021 6.01992 6.18929 6.27019 6.44239 6.51360 6.57833 6.75454 6.78690 7.03126 7.45924 7.61525 7.77489 8.20582 8.33575 8.49071 8.96319 9.54904 11.03116 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.063252 B = 0.007238 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.570168 B = 3867.619245 C = 4153.026570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.203 3.797 3 H 0.049 0.951 4 C -0.496 4.496 5 H 0.065 0.935 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.906 3.094 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.491 5.491 13 O -0.264 6.264 14 C 0.088 3.912 15 C -0.137 4.137 16 C -0.126 4.126 17 C -0.120 4.120 18 C -0.125 4.125 19 H 0.010 0.990 20 H 0.028 0.972 21 H 0.092 0.908 22 H 0.262 0.738 23 H 0.314 0.686 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.945 -2.321 -12.134 12.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.095 3.905 3 H 0.067 0.933 4 C -0.535 4.535 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.533 5.533 8 Si 0.733 3.267 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.164 5.164 13 O -0.268 6.268 14 C 0.028 3.972 15 C -0.175 4.175 16 C -0.164 4.164 17 C -0.157 4.157 18 C -0.163 4.163 19 H 0.029 0.971 20 H 0.047 0.953 21 H 0.110 0.890 22 H 0.072 0.928 23 H 0.128 0.872 24 H 0.080 0.920 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.494 -1.923 -11.800 12.456 hybrid contribution -0.763 -0.449 0.563 1.050 sum 2.731 -2.372 -11.237 11.805 Atomic orbital electron populations 1.22462 1.00056 0.99283 1.01074 1.19495 0.90296 0.96309 0.84378 0.93300 1.20907 1.31121 1.12745 0.88727 0.91667 1.24921 0.95177 0.95204 0.99024 1.69897 1.36769 1.22949 1.23635 0.86376 0.78488 0.79891 0.81922 1.20576 1.21266 1.19817 1.67368 1.52182 1.03348 0.93468 1.90811 1.87183 1.29172 1.19663 1.22758 0.93260 0.96092 0.85089 1.22959 0.96849 1.02794 0.94902 1.22310 0.98305 0.99612 0.96156 1.22054 0.95625 1.00160 0.97893 1.22214 0.97835 1.01591 0.94699 0.97078 0.95283 0.88969 0.92819 0.87247 0.92031 0.91234 0.90829 0.91916 0.91887 0.91856 0.92094 0.90849 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.99 37.16 0.33 -3.91 16 2 C 0.20 5.39 2.92 -68.87 -0.20 5.19 16 3 H 0.05 1.45 8.05 -51.93 -0.42 1.04 16 4 C -0.50 -13.93 8.84 -34.44 -0.30 -14.23 16 5 H 0.07 1.82 7.81 -52.48 -0.41 1.41 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.89 -25.76 11.32 55.43 0.63 -25.13 16 8 Si 0.91 21.46 29.54 -169.99 -5.02 16.43 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.49 -11.34 7.07 -5.66 -0.04 -11.38 16 13 O -0.26 -5.70 10.94 -13.92 -0.15 -5.85 16 14 C 0.09 1.46 3.64 -24.88 -0.09 1.37 16 15 C -0.14 -2.09 6.65 -24.55 -0.16 -2.25 16 16 C -0.13 -1.49 6.82 -25.07 -0.17 -1.66 16 17 C -0.12 -1.36 6.80 -25.62 -0.17 -1.54 16 18 C -0.12 -1.72 6.56 -25.62 -0.17 -1.89 16 19 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 20 H 0.03 0.67 8.12 -51.93 -0.42 0.25 16 21 H 0.09 2.51 6.07 -51.93 -0.32 2.19 16 22 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 23 H 0.31 6.61 8.47 -39.29 -0.33 6.28 16 24 H 0.06 0.98 7.99 -51.93 -0.42 0.56 16 25 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 26 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 1.09 8.07 -51.93 -0.42 0.67 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 264.74 15.07 3.99 3.99 Total: -1.00 -29.13 264.74 -6.88 -36.01 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.25 Total: 3.33 kcal Atomic # 6 Polarization: -16.36 SS G_CDS: -1.03 Total: -17.39 kcal Atomic # 7 Polarization: -37.11 SS G_CDS: 0.59 Total: -36.52 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -0.15 Total: -5.85 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.13 -6.88 -36.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135117415.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.447 kcal (2) G-P(sol) polarization free energy of solvation -29.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds