Wall clock time and date at job start Mon Mar 30 2020 01:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.46785 * 2 1 4 4 C 1.50697 * 109.47153 * 120.00263 * 2 1 3 5 5 H 1.08004 * 119.99456 * 120.00037 * 4 2 1 6 6 C 1.37871 * 120.00169 * 300.00250 * 4 2 1 7 7 N 1.31509 * 120.00239 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99963 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.47587 * 89.99818 * 8 6 4 10 10 H 1.48500 * 109.47192 * 209.99542 * 8 6 4 11 11 H 1.48498 * 109.47051 * 329.99541 * 8 6 4 12 12 N 1.46898 * 109.47030 * 240.00667 * 2 1 3 13 13 O 1.46300 * 111.00309 * 89.99916 * 12 2 1 14 14 C 1.42901 * 114.00231 * 179.97438 * 13 12 2 15 15 C 1.55238 * 110.46638 * 269.80780 * 14 13 12 16 16 C 1.54894 * 102.58338 * 203.39157 * 15 14 13 17 17 C 1.54266 * 104.31305 * 37.93170 * 16 15 14 18 18 C 1.53869 * 106.60031 * 336.32486 * 17 16 15 19 19 H 1.09001 * 109.47515 * 59.99789 * 1 2 3 20 20 H 1.08999 * 109.46997 * 179.97438 * 1 2 3 21 21 H 1.09005 * 109.47111 * 299.99348 * 1 2 3 22 22 H 0.97002 * 120.00359 * 180.02562 * 7 6 4 23 23 H 1.00901 * 110.99933 * 326.04194 * 12 2 1 24 24 H 1.09007 * 110.43106 * 32.45837 * 14 13 12 25 25 H 1.08996 * 110.89448 * 85.10721 * 15 14 13 26 26 H 1.08993 * 110.76342 * 321.62387 * 15 14 13 27 27 H 1.09002 * 110.48891 * 279.18596 * 16 15 14 28 28 H 1.08998 * 110.48494 * 156.67683 * 16 15 14 29 29 H 1.09001 * 110.03084 * 95.60669 * 17 16 15 30 30 H 1.08996 * 110.03108 * 216.98559 * 17 16 15 31 31 H 1.08999 * 110.04012 * 119.28327 * 18 17 16 32 32 H 1.09006 * 110.02998 * 240.67078 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8300 2.6035 8 14 2.3225 -1.1198 4.0078 9 1 3.6305 -0.5443 4.4118 10 1 1.3445 -0.9493 5.1122 11 1 2.4880 -2.5656 3.7119 12 7 2.0196 -0.6923 -1.1995 13 8 2.1944 0.2434 -2.3105 14 6 2.6706 -0.3643 -3.5129 15 6 4.2224 -0.3480 -3.5517 16 6 4.5231 -0.4462 -5.0680 17 6 3.4295 0.4170 -5.7304 18 6 2.2517 0.4691 -4.7417 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8901 22 1 0.7095 1.1615 3.4845 23 1 1.4035 -1.4487 -1.4573 24 1 2.2958 -1.3844 -3.5980 25 1 4.6336 -1.2060 -3.0200 26 1 4.6094 0.5843 -3.1407 27 1 4.4496 -1.4801 -5.4054 28 1 5.5120 -0.0437 -5.2876 29 1 3.8077 1.4227 -5.9138 30 1 3.1112 -0.0387 -6.6680 31 1 2.0582 1.5000 -4.4452 32 1 1.3608 0.0389 -5.1993 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000135117415.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:20 Heat of formation + Delta-G solvation = -38.633320 kcal Electronic energy + Delta-G solvation = -12882.869706 eV Core-core repulsion = 10650.700471 eV Total energy + Delta-G solvation = -2232.169235 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.31392 -37.32100 -35.51306 -33.20855 -29.62291 -29.04054 -27.54708 -27.26175 -22.45900 -21.56304 -21.04678 -18.75472 -17.87074 -16.94509 -16.41177 -15.90656 -15.29149 -15.02674 -14.53232 -14.26556 -13.80480 -13.24537 -13.04804 -12.89805 -12.83984 -12.59502 -12.25911 -12.07972 -12.01144 -11.94006 -11.60217 -11.33135 -11.25419 -10.88751 -10.55106 -9.26097 -8.17280 -6.30757 1.44032 1.45584 1.56359 2.04447 2.49395 3.12527 3.74501 3.76172 3.93562 4.30167 4.43535 4.55300 4.62294 4.66480 4.76230 4.78500 4.82932 4.94163 5.00213 5.09062 5.19090 5.21653 5.34774 5.48913 5.51019 5.56453 5.71074 6.15477 6.28793 6.71419 6.79397 7.38239 8.90237 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.063252 B = 0.007238 C = 0.006740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.570168 B = 3867.619245 C = 4153.026570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.208 3.792 3 H 0.006 0.994 4 C -0.519 4.519 5 H 0.062 0.938 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.974 3.026 9 H -0.276 1.276 10 H -0.280 1.280 11 H -0.264 1.264 12 N -0.494 5.494 13 O -0.282 6.282 14 C 0.072 3.928 15 C -0.140 4.140 16 C -0.117 4.117 17 C -0.114 4.114 18 C -0.121 4.121 19 H 0.021 0.979 20 H 0.041 0.959 21 H 0.068 0.932 22 H 0.265 0.735 23 H 0.325 0.675 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.388 -3.405 -13.163 14.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.099 3.901 3 H 0.024 0.976 4 C -0.557 4.557 5 H 0.081 0.919 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.799 3.201 9 H -0.202 1.202 10 H -0.205 1.205 11 H -0.189 1.189 12 N -0.166 5.166 13 O -0.289 6.289 14 C 0.013 3.987 15 C -0.178 4.178 16 C -0.154 4.154 17 C -0.151 4.151 18 C -0.160 4.160 19 H 0.040 0.960 20 H 0.060 0.940 21 H 0.087 0.913 22 H 0.074 0.926 23 H 0.140 0.860 24 H 0.089 0.911 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.096 0.904 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.076 0.924 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.937 -3.023 -12.846 13.772 hybrid contribution -0.887 -0.083 0.790 1.191 sum 3.050 -3.106 -12.056 12.818 Atomic orbital electron populations 1.22271 0.99041 0.99801 1.00393 1.19236 0.90997 0.94045 0.85796 0.97646 1.21169 1.31669 1.13010 0.89877 0.91947 1.25794 0.95103 0.95823 1.02078 1.70027 1.37428 1.24083 1.24512 0.85307 0.77918 0.78995 0.77890 1.20206 1.20516 1.18867 1.67137 1.52045 1.03579 0.93791 1.90788 1.87843 1.29635 1.20670 1.23218 0.94309 0.97089 0.84104 1.22936 0.95742 1.01385 0.97772 1.22287 0.99284 1.00888 0.92985 1.22063 0.94211 1.00846 0.98017 1.22242 0.99748 1.00135 0.93908 0.95977 0.94019 0.91289 0.92579 0.86006 0.91055 0.92058 0.92836 0.90341 0.90399 0.91175 0.89513 0.92391 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.87 8.99 71.98 0.65 -7.22 16 2 C 0.21 11.30 2.92 44.17 0.13 11.43 16 3 H 0.01 0.35 8.05 -2.39 -0.02 0.33 16 4 C -0.52 -29.45 8.84 25.60 0.23 -29.23 16 5 H 0.06 3.50 7.81 -2.91 -0.02 3.47 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -53.79 11.32 21.44 0.24 -53.54 16 8 Si 0.97 43.83 29.54 68.60 2.03 45.85 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 12 N -0.49 -23.07 7.07 -171.81 -1.21 -24.28 16 13 O -0.28 -12.36 10.94 -50.16 -0.55 -12.90 16 14 C 0.07 2.32 3.64 31.79 0.12 2.44 16 15 C -0.14 -4.18 6.65 32.01 0.21 -3.97 16 16 C -0.12 -2.44 6.82 31.67 0.22 -2.22 16 17 C -0.11 -2.24 6.80 31.32 0.21 -2.03 16 18 C -0.12 -3.15 6.56 31.32 0.21 -2.94 16 19 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 20 H 0.04 1.94 8.12 -2.39 -0.02 1.92 16 21 H 0.07 3.82 6.07 -2.38 -0.01 3.80 16 22 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 23 H 0.33 13.63 8.47 -89.69 -0.76 12.87 16 24 H 0.07 2.17 7.99 -2.38 -0.02 2.15 16 25 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.06 1.68 8.07 -2.39 -0.02 1.66 16 32 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -62.74 264.74 3.24 -59.50 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.32 Total: 18.06 kcal Atomic # 6 Polarization: -35.10 SS G_CDS: 2.41 Total: -32.69 kcal Atomic # 7 Polarization: -76.85 SS G_CDS: -0.97 Total: -77.83 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.55 Total: -12.90 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Total: -62.74 3.24 -59.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000135117415.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.866 kcal (2) G-P(sol) polarization free energy of solvation -62.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds