Wall clock time and date at job start Mon Mar 30 2020 02:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31183 * 1 3 3 Si 1.86802 * 120.00083 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00045 * 3 2 1 5 5 H 1.48495 * 109.47148 * 30.00251 * 3 2 1 6 6 H 1.48509 * 109.47123 * 150.00050 * 3 2 1 7 7 C 1.39170 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00013 * 162.77106 * 7 2 1 9 9 N 1.37098 * 119.99740 * 343.05629 * 7 2 1 10 10 C 1.35819 * 120.07643 * 330.83266 * 9 7 2 11 11 N 1.30608 * 121.35036 * 179.70156 * 10 9 7 12 12 C 1.33652 * 121.45280 * 0.58170 * 11 10 9 13 13 Cl 1.73601 * 120.00611 * 179.73139 * 12 11 10 14 14 C 1.36504 * 119.98852 * 359.71189 * 12 11 10 15 15 C 1.35022 * 120.07608 * 151.10546 * 9 7 2 16 16 O 1.21994 * 120.67830 * 0.02721 * 15 9 7 17 17 H 0.97006 * 119.99693 * 359.97438 * 1 2 3 18 18 H 1.08000 * 119.32513 * 359.97438 * 10 9 7 19 19 H 1.08003 * 120.63421 * 179.97438 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3118 0.0000 0.0000 3 14 2.2459 1.6177 0.0000 4 1 2.4934 2.0464 -1.4001 5 1 1.4434 2.6526 0.7001 6 1 3.5435 1.4401 0.7001 7 6 2.0077 -1.2052 0.0005 8 1 3.0513 -1.2263 -0.2765 9 7 1.3668 -2.3666 0.3471 10 6 0.3237 -2.3351 1.2163 11 7 -0.3083 -3.4255 1.5592 12 6 0.0508 -4.6199 1.0790 13 17 -0.8113 -6.0461 1.5655 14 6 1.0953 -4.7183 0.2057 15 6 1.7747 -3.5450 -0.1707 16 8 2.7133 -3.5915 -0.9485 17 1 -0.4850 0.8401 0.0004 18 1 0.0076 -1.3885 1.6292 19 1 1.3946 -5.6783 -0.1885 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166224713.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:50 Heat of formation + Delta-G solvation = -9.326456 kcal Electronic energy + Delta-G solvation = -10548.719654 eV Core-core repulsion = 8285.605230 eV Total energy + Delta-G solvation = -2263.114424 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 200.009 amu Computer time = 0.09 seconds Orbital eigenvalues (eV) -40.53675 -36.57312 -35.94004 -34.79160 -32.08028 -29.80811 -26.29965 -23.64730 -22.27819 -18.91821 -17.30372 -16.40698 -15.62618 -14.88761 -14.66341 -13.90257 -13.36263 -12.50613 -12.42494 -12.19723 -11.61889 -11.47052 -11.02843 -10.75513 -10.71901 -9.94218 -9.17607 -8.99605 -8.91620 -7.58873 -7.17993 -4.84144 1.62913 2.48876 2.84774 2.87697 2.90213 2.97134 3.58480 4.11004 4.29301 4.91350 5.38219 5.90545 6.33881 6.43314 6.68091 6.79403 7.38418 7.75975 8.09670 8.40184 8.90947 9.22623 9.80783 Molecular weight = 200.01amu Principal moments of inertia in cm(-1) A = 0.065517 B = 0.010991 C = 0.009665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.267289 B = 2546.889419 C = 2896.311935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.047 3.953 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.330 4.330 8 H 0.125 0.875 9 N -0.326 5.326 10 C 0.348 3.652 11 N -0.566 5.566 12 C 0.212 3.788 13 Cl -0.062 7.062 14 C -0.320 4.320 15 C 0.482 3.518 16 O -0.574 6.574 17 H 0.294 0.706 18 H 0.206 0.794 19 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.125 -0.255 3.415 3.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.166 4.166 3 Si 0.772 3.228 4 H -0.191 1.191 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.459 4.459 8 H 0.143 0.857 9 N -0.021 5.021 10 C 0.069 3.931 11 N -0.294 5.294 12 C 0.055 3.945 13 Cl -0.034 7.034 14 C -0.349 4.349 15 C 0.287 3.713 16 O -0.457 6.457 17 H 0.105 0.895 18 H 0.223 0.777 19 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.379 -0.265 3.421 3.698 hybrid contribution 0.567 0.437 -0.632 0.955 sum -0.812 0.172 2.789 2.910 Atomic orbital electron populations 1.69714 1.06760 1.30811 1.38892 1.25857 0.95739 1.01608 0.93369 0.85553 0.79670 0.77967 0.79633 1.19118 1.19557 1.18125 1.20365 0.97471 0.82092 1.45982 0.85748 1.43046 1.22754 1.09437 1.26862 1.24833 0.85496 0.96778 0.85982 1.67656 1.32795 0.96655 1.32285 1.21336 0.91277 0.87746 0.94151 1.98322 1.77641 1.36046 1.91358 1.22166 1.03456 0.99807 1.09476 1.17014 0.87154 0.83512 0.83647 1.90781 1.31061 1.86013 1.37886 0.89521 0.77746 0.84272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -19.22 11.19 55.50 0.62 -18.60 13 2 C 0.05 1.06 5.02 -17.48 -0.09 0.97 13 3 Si 0.95 17.17 29.59 -169.99 -5.03 12.14 13 4 H -0.27 -4.88 7.11 56.52 0.40 -4.48 13 5 H -0.27 -4.69 7.11 56.52 0.40 -4.29 13 6 H -0.26 -4.61 7.11 56.52 0.40 -4.21 13 7 C -0.33 -8.27 9.13 -14.85 -0.14 -8.41 13 8 H 0.12 3.16 7.59 -52.49 -0.40 2.76 13 9 N -0.33 -8.32 2.74 -65.76 -0.18 -8.50 13 10 C 0.35 8.16 10.31 -89.57 -0.92 7.24 13 11 N -0.57 -12.91 10.39 -11.30 -0.12 -13.03 13 12 C 0.21 4.65 7.28 -17.38 -0.13 4.52 13 13 Cl -0.06 -1.11 29.12 -51.86 -1.51 -2.62 13 14 C -0.32 -7.40 9.82 -39.27 -0.39 -7.79 13 15 C 0.48 12.73 7.39 -15.22 -0.11 12.62 13 16 O -0.57 -16.58 16.96 4.92 0.08 -16.50 13 17 H 0.29 6.13 8.30 -40.82 -0.34 5.79 13 18 H 0.21 4.58 6.20 -52.49 -0.33 4.25 13 19 H 0.14 2.94 8.06 -52.48 -0.42 2.52 13 LS Contribution 200.41 15.07 3.02 3.02 Total: -1.00 -27.41 200.41 -5.16 -32.58 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -0.28 Total: 2.34 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: -1.77 Total: 9.16 kcal Atomic # 7 Polarization: -40.45 SS G_CDS: 0.32 Total: -40.12 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.08 Total: -16.50 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Atomic # 17 Polarization: -1.11 SS G_CDS: -1.51 Total: -2.62 kcal Total LS contribution 3.02 Total: 3.02 kcal Total: -27.41 -5.16 -32.58 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166224713.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.251 kcal (2) G-P(sol) polarization free energy of solvation -27.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.09 seconds