Wall clock time and date at job start Mon Mar 30 2020 02:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31183 * 1 3 3 Si 1.86802 * 120.00083 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00045 * 3 2 1 5 5 H 1.48495 * 109.47148 * 30.00251 * 3 2 1 6 6 H 1.48509 * 109.47123 * 150.00050 * 3 2 1 7 7 C 1.39170 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00013 * 162.77106 * 7 2 1 9 9 N 1.37098 * 119.99740 * 343.05629 * 7 2 1 10 10 C 1.35819 * 120.07643 * 330.83266 * 9 7 2 11 11 N 1.30608 * 121.35036 * 179.70156 * 10 9 7 12 12 C 1.33652 * 121.45280 * 0.58170 * 11 10 9 13 13 Cl 1.73601 * 120.00611 * 179.73139 * 12 11 10 14 14 C 1.36504 * 119.98852 * 359.71189 * 12 11 10 15 15 C 1.35022 * 120.07608 * 151.10546 * 9 7 2 16 16 O 1.21994 * 120.67830 * 0.02721 * 15 9 7 17 17 H 0.97006 * 119.99693 * 359.97438 * 1 2 3 18 18 H 1.08000 * 119.32513 * 359.97438 * 10 9 7 19 19 H 1.08003 * 120.63421 * 179.97438 * 14 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3118 0.0000 0.0000 3 14 2.2459 1.6177 0.0000 4 1 2.4934 2.0464 -1.4001 5 1 1.4434 2.6526 0.7001 6 1 3.5435 1.4401 0.7001 7 6 2.0077 -1.2052 0.0005 8 1 3.0513 -1.2263 -0.2765 9 7 1.3668 -2.3666 0.3471 10 6 0.3237 -2.3351 1.2163 11 7 -0.3083 -3.4255 1.5592 12 6 0.0508 -4.6199 1.0790 13 17 -0.8113 -6.0461 1.5655 14 6 1.0953 -4.7183 0.2057 15 6 1.7747 -3.5450 -0.1707 16 8 2.7133 -3.5915 -0.9485 17 1 -0.4850 0.8401 0.0004 18 1 0.0076 -1.3885 1.6292 19 1 1.3946 -5.6783 -0.1885 RHF calculation, no. of doubly occupied orbitals= 32 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166224713.mol2 19 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:50 Heat of formation + Delta-G solvation = -25.853437 kcal Electronic energy + Delta-G solvation = -10549.436318 eV Core-core repulsion = 8285.605230 eV Total energy + Delta-G solvation = -2263.831088 eV No. of doubly occupied orbitals = 32 Molecular weight (most abundant/longest-lived isotopes) = 200.009 amu Computer time = 0.10 seconds Orbital eigenvalues (eV) -42.44099 -38.43283 -37.74568 -36.57962 -33.93184 -31.69426 -28.15955 -25.50935 -24.17269 -20.76461 -19.18958 -18.27669 -17.47529 -16.74237 -16.39146 -15.62243 -15.28999 -14.27322 -14.24593 -13.91547 -13.51418 -13.09220 -12.65873 -12.34040 -12.09960 -11.62815 -11.02494 -10.98261 -10.72404 -9.47385 -8.94715 -6.74421 -0.18698 0.77986 0.92316 1.37956 1.43720 1.57999 2.03540 2.35829 2.46905 3.01524 3.54252 4.08372 4.51508 4.58299 4.84453 5.00090 5.50125 5.90357 6.20011 6.54788 7.02900 7.27316 8.08234 Molecular weight = 200.01amu Principal moments of inertia in cm(-1) A = 0.065517 B = 0.010991 C = 0.009665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 427.267289 B = 2546.889419 C = 2896.311935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.023 3.977 3 Si 1.020 2.980 4 H -0.268 1.268 5 H -0.250 1.250 6 H -0.257 1.257 7 C -0.370 4.370 8 H 0.109 0.891 9 N -0.332 5.332 10 C 0.345 3.655 11 N -0.561 5.561 12 C 0.211 3.789 13 Cl -0.019 7.019 14 C -0.321 4.321 15 C 0.455 3.545 16 O -0.617 6.617 17 H 0.307 0.693 18 H 0.215 0.785 19 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.914 0.441 4.113 4.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.479 5.479 2 C -0.188 4.188 3 Si 0.838 3.162 4 H -0.193 1.193 5 H -0.174 1.174 6 H -0.180 1.180 7 C -0.498 4.498 8 H 0.127 0.873 9 N -0.026 5.026 10 C 0.067 3.933 11 N -0.289 5.289 12 C 0.053 3.947 13 Cl 0.010 6.990 14 C -0.350 4.350 15 C 0.262 3.738 16 O -0.505 6.505 17 H 0.118 0.882 18 H 0.231 0.769 19 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -2.220 0.403 4.149 4.722 hybrid contribution 0.688 0.147 -0.811 1.074 sum -1.532 0.550 3.337 3.713 Atomic orbital electron populations 1.69708 1.07875 1.32616 1.37677 1.26765 0.96489 1.03927 0.91609 0.84557 0.78506 0.73560 0.79545 1.19264 1.17372 1.18048 1.20538 0.97476 0.83074 1.48717 0.87292 1.43185 1.23032 1.09470 1.26922 1.25063 0.85046 0.97477 0.85757 1.67757 1.32362 0.96903 1.31839 1.21508 0.91154 0.88703 0.93370 1.98334 1.76505 1.33342 1.90829 1.22230 1.03533 0.99444 1.09749 1.17558 0.87530 0.84755 0.83941 1.90728 1.32999 1.86707 1.40046 0.88155 0.76870 0.82579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -38.21 11.19 21.69 0.24 -37.97 13 2 C 0.02 1.04 5.02 85.01 0.43 1.46 13 3 Si 1.02 33.93 29.59 68.60 2.03 35.96 13 4 H -0.27 -8.97 7.11 99.48 0.71 -8.27 13 5 H -0.25 -7.48 7.11 99.48 0.71 -6.77 13 6 H -0.26 -8.47 7.11 99.48 0.71 -7.77 13 7 C -0.37 -18.82 9.13 84.09 0.77 -18.06 13 8 H 0.11 5.75 7.59 -2.91 -0.02 5.73 13 9 N -0.33 -17.15 2.74 -479.92 -1.31 -18.46 13 10 C 0.35 16.06 10.31 179.98 1.86 17.91 13 11 N -0.56 -24.93 10.39 -189.65 -1.97 -26.90 13 12 C 0.21 8.93 7.28 84.01 0.61 9.54 13 13 Cl -0.02 -0.62 29.12 -2.72 -0.08 -0.70 13 14 C -0.32 -14.75 9.82 22.47 0.22 -14.52 13 15 C 0.46 24.51 7.39 84.81 0.63 25.14 13 16 O -0.62 -36.85 16.96 -5.29 -0.09 -36.94 13 17 H 0.31 12.20 8.30 -92.70 -0.77 11.43 13 18 H 0.22 9.41 6.20 -2.91 -0.02 9.39 13 19 H 0.16 6.47 8.06 -2.91 -0.02 6.45 13 Total: -1.00 -57.97 200.41 4.62 -53.35 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 1.29 Total: 10.19 kcal Atomic # 6 Polarization: 16.97 SS G_CDS: 4.51 Total: 21.47 kcal Atomic # 7 Polarization: -80.29 SS G_CDS: -3.04 Total: -83.33 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.09 Total: -36.94 kcal Atomic # 14 Polarization: 33.93 SS G_CDS: 2.03 Total: 35.96 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -0.08 Total: -0.70 kcal Total: -57.97 4.62 -53.35 kcal The number of atoms in the molecule is 19 The average number of expansion shells was 13.00 The maximum number of expansion shells was 13 The minimum number of expansion shells was 13 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166224713.mol2 19 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.498 kcal (2) G-P(sol) polarization free energy of solvation -57.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.10 seconds