Wall clock time and date at job start Mon Mar 30 2020 02:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99890 * 2 1 4 4 H 1.09002 * 109.47401 * 34.99821 * 3 2 1 5 5 C 1.53002 * 109.46860 * 274.99873 * 3 2 1 6 6 C 1.53006 * 109.46711 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.47445 * 59.99695 * 6 5 3 8 8 C 1.53002 * 109.47092 * 300.00075 * 7 6 5 9 9 C 1.53000 * 109.46769 * 155.00113 * 3 2 1 10 10 H 1.09001 * 109.47194 * 299.99524 * 9 3 2 11 11 O 1.42895 * 109.47621 * 59.99854 * 9 3 2 12 12 C 1.34920 * 117.00128 * 210.00036 * 11 9 3 13 13 H 1.08001 * 120.00070 * 0.02562 * 12 11 9 14 14 C 1.38641 * 120.00177 * 179.97438 * 12 11 9 15 15 N 1.31583 * 119.99636 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 120.00303 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.46990 * 89.99834 * 16 14 12 18 18 H 1.48493 * 109.47268 * 209.99870 * 16 14 12 19 19 H 1.48496 * 109.47127 * 329.99994 * 16 14 12 20 20 H 1.09002 * 109.47391 * 300.00224 * 1 2 3 21 21 H 1.09005 * 109.47266 * 59.99895 * 1 2 3 22 22 H 1.09000 * 109.47298 * 179.97438 * 1 2 3 23 23 H 1.00901 * 110.99385 * 123.95223 * 2 1 3 24 24 H 1.09002 * 109.47075 * 299.99593 * 5 3 2 25 25 H 1.08996 * 109.47407 * 60.00550 * 5 3 2 26 26 H 1.09001 * 109.46726 * 179.97438 * 6 5 3 27 27 H 1.09002 * 109.46589 * 299.99365 * 6 5 3 28 28 H 1.09002 * 109.47045 * 59.99942 * 7 6 5 29 29 H 1.09000 * 109.47140 * 179.97438 * 7 6 5 30 30 H 1.09000 * 109.46497 * 180.02562 * 8 7 6 31 31 H 1.09002 * 109.47067 * 299.99853 * 8 7 6 32 32 H 0.96999 * 119.99884 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 1 1.3397 2.0124 0.5894 5 6 2.0608 1.8926 -1.4371 6 6 2.6097 3.3208 -1.4371 7 6 4.0130 3.3279 -0.8276 8 6 3.9475 2.8067 0.6095 9 6 3.3987 1.3790 0.6096 10 1 3.3521 1.0077 1.6334 11 8 4.2583 0.5388 -0.1631 12 6 5.2705 -0.0684 0.4905 13 1 5.4014 0.0909 1.5506 14 6 6.1419 -0.8978 -0.1986 15 7 5.9815 -1.0931 -1.4899 16 14 7.5437 -1.7380 0.7060 17 1 7.0853 -3.0558 1.2145 18 1 8.6847 -1.9358 -0.2235 19 1 7.9754 -0.8904 1.8464 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 1.8305 -0.5261 0.7814 24 1 2.7166 1.2517 -2.0264 25 1 1.0611 1.8872 -1.8714 26 1 2.6567 3.6919 -2.4609 27 1 1.9542 3.9619 -0.8476 28 1 4.6684 2.6868 -1.4171 29 1 4.4042 4.3453 -0.8280 30 1 4.9473 2.8123 1.0437 31 1 3.2921 3.4479 1.1990 32 1 6.5914 -1.6731 -1.9722 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166680090.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:18 Heat of formation + Delta-G solvation = -69.396445 kcal Electronic energy + Delta-G solvation = -13585.241900 eV Core-core repulsion = 11351.738676 eV Total energy + Delta-G solvation = -2233.503224 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.21366 -36.95472 -35.59603 -33.66762 -30.90001 -29.98037 -26.56992 -25.65202 -23.23104 -22.36292 -20.57599 -19.32880 -17.36588 -16.69116 -16.19890 -15.89830 -15.40150 -15.35724 -14.53628 -14.24509 -13.87003 -13.62470 -13.43616 -13.01906 -12.81382 -12.68294 -12.39712 -12.16939 -12.02891 -11.88878 -11.60546 -11.08898 -10.96495 -10.70355 -9.96827 -9.17700 -8.05990 -5.71342 1.40345 1.45946 1.54317 2.37721 3.24961 3.34341 3.71340 3.90717 4.16689 4.24429 4.36113 4.41507 4.55107 4.60251 4.62972 4.69486 4.73640 4.96933 5.00557 5.04873 5.08945 5.25174 5.29773 5.41698 5.45724 5.51013 5.74427 6.30763 6.33546 6.52439 7.37517 8.24051 9.18437 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.035992 B = 0.011822 C = 0.010245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.768597 B = 2367.848549 C = 2732.341315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.705 5.705 3 C 0.103 3.897 4 H 0.065 0.935 5 C -0.097 4.097 6 C -0.105 4.105 7 C -0.109 4.109 8 C -0.131 4.131 9 C 0.082 3.918 10 H 0.027 0.973 11 O -0.296 6.296 12 C -0.362 4.362 13 H 0.063 0.937 14 C -0.041 4.041 15 N -0.935 5.935 16 Si 0.993 3.007 17 H -0.274 1.274 18 H -0.283 1.283 19 H -0.262 1.262 20 H 0.030 0.970 21 H 0.065 0.935 22 H 0.070 0.930 23 H 0.337 0.663 24 H 0.033 0.967 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.029 0.971 29 H 0.073 0.927 30 H 0.044 0.956 31 H 0.085 0.915 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.405 7.226 4.525 11.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.336 5.336 3 C -0.007 4.007 4 H 0.082 0.918 5 C -0.135 4.135 6 C -0.143 4.143 7 C -0.147 4.147 8 C -0.169 4.169 9 C 0.023 3.977 10 H 0.045 0.955 11 O -0.211 6.211 12 C -0.442 4.442 13 H 0.081 0.919 14 C -0.234 4.234 15 N -0.581 5.581 16 Si 0.817 3.183 17 H -0.200 1.200 18 H -0.209 1.209 19 H -0.187 1.187 20 H 0.049 0.951 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.155 0.845 24 H 0.052 0.948 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.100 0.900 28 H 0.048 0.952 29 H 0.092 0.908 30 H 0.062 0.938 31 H 0.103 0.897 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -8.337 7.052 3.534 11.477 hybrid contribution 0.754 -0.442 1.325 1.587 sum -7.583 6.609 4.859 11.171 Atomic orbital electron populations 1.22276 0.86739 1.02148 1.00527 1.60188 1.08271 1.14325 1.50833 1.21589 0.92994 0.89076 0.97004 0.91751 1.21348 1.00070 0.96142 0.95974 1.21464 0.95824 0.95851 1.01191 1.21333 0.97697 0.99905 0.95742 1.21957 1.00664 0.96494 0.97799 1.22226 0.90959 0.91413 0.93092 0.95454 1.85737 1.40161 1.60784 1.34375 1.21263 1.06049 1.24438 0.92443 0.91943 1.25981 1.01471 0.99336 0.96570 1.70214 1.39210 1.39886 1.08801 0.84923 0.77344 0.78533 0.77487 1.19986 1.20883 1.18668 0.95136 0.91653 0.91105 0.84491 0.94827 0.91590 0.91324 0.89999 0.95170 0.90830 0.93757 0.89672 0.93641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 10.50 127.69 1.34 2.23 16 2 N -0.71 -26.52 6.53 -514.59 -3.36 -29.88 16 3 C 0.10 3.77 2.28 44.92 0.10 3.87 16 4 H 0.06 1.98 7.80 -2.39 -0.02 1.96 16 5 C -0.10 -3.57 5.28 30.60 0.16 -3.41 16 6 C -0.11 -3.25 5.92 30.60 0.18 -3.07 16 7 C -0.11 -3.96 5.78 30.59 0.18 -3.78 16 8 C -0.13 -4.86 5.63 30.58 0.17 -4.69 16 9 C 0.08 3.55 2.27 30.58 0.07 3.62 16 10 H 0.03 1.18 7.78 -2.39 -0.02 1.16 16 11 O -0.30 -16.73 7.94 -81.89 -0.65 -17.38 16 12 C -0.36 -21.37 9.77 67.92 0.66 -20.70 16 13 H 0.06 3.48 7.64 -2.91 -0.02 3.46 16 14 C -0.04 -2.44 5.49 84.83 0.47 -1.97 16 15 N -0.94 -60.77 13.67 21.61 0.30 -60.47 16 16 Si 0.99 46.29 29.55 68.60 2.03 48.32 16 17 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 18 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 19 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 20 H 0.03 0.72 8.06 -2.39 -0.02 0.70 16 21 H 0.06 1.71 7.44 -2.38 -0.02 1.69 16 22 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 23 H 0.34 13.16 8.43 -89.69 -0.76 12.40 16 24 H 0.03 1.58 7.68 -2.39 -0.02 1.57 16 25 H 0.07 2.10 7.45 -2.39 -0.02 2.09 16 26 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 27 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.03 1.38 7.68 -2.39 -0.02 1.36 16 29 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 2.50 8.14 -2.39 -0.02 2.49 16 32 H 0.25 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -70.53 259.06 1.97 -68.56 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.33 Total: 18.76 kcal Atomic # 6 Polarization: -31.24 SS G_CDS: 3.33 Total: -27.91 kcal Atomic # 7 Polarization: -87.29 SS G_CDS: -3.06 Total: -90.35 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.65 Total: -17.38 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -70.53 1.97 -68.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166680090.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.838 kcal (2) G-P(sol) polarization free energy of solvation -70.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds