Wall clock time and date at job start Mon Mar 30 2020 02:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 111.00157 * 2 1 4 4 H 1.09000 * 109.46374 * 35.00338 * 3 2 1 5 5 C 1.52997 * 109.47252 * 275.00117 * 3 2 1 6 6 C 1.52999 * 109.46991 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.46626 * 60.00378 * 6 5 3 8 8 C 1.52997 * 109.47127 * 299.99539 * 7 6 5 9 9 C 1.52996 * 109.46983 * 155.00111 * 3 2 1 10 10 H 1.08996 * 109.47452 * 60.00080 * 9 3 2 11 11 O 1.42911 * 109.47245 * 300.00140 * 9 3 2 12 12 C 1.34921 * 116.99578 * 150.00213 * 11 9 3 13 13 H 1.07992 * 120.00483 * 359.97438 * 12 11 9 14 14 C 1.38642 * 119.99241 * 180.02562 * 12 11 9 15 15 N 1.31572 * 120.00484 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99721 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46960 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46598 * 119.99955 * 16 14 12 19 19 H 1.48496 * 109.47296 * 240.00437 * 16 14 12 20 20 H 1.09004 * 109.47329 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47241 * 299.99901 * 1 2 3 22 22 H 1.09006 * 109.47335 * 59.99935 * 1 2 3 23 23 H 1.00906 * 111.00015 * 236.04723 * 2 1 3 24 24 H 1.09002 * 109.47153 * 59.99950 * 5 3 2 25 25 H 1.08993 * 109.47194 * 300.00238 * 5 3 2 26 26 H 1.08993 * 109.47839 * 300.00447 * 6 5 3 27 27 H 1.09000 * 109.47160 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.46801 * 59.99811 * 7 6 5 29 29 H 1.09001 * 109.46998 * 179.97438 * 7 6 5 30 30 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 31 31 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 32 32 H 0.96998 * 120.00765 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3397 2.0122 0.5895 5 6 2.0609 1.8927 -1.4370 6 6 2.6086 3.3213 -1.4368 7 6 4.0119 3.3293 -0.8271 8 6 3.9465 2.8080 0.6099 9 6 3.3987 1.3790 0.6096 10 1 4.0544 0.7381 0.0202 11 8 3.3377 0.8921 1.9518 12 6 4.4296 0.2543 2.4222 13 1 5.2969 0.1310 1.7907 14 6 4.4377 -0.2437 3.7161 15 7 3.3804 -0.0948 4.4850 16 14 5.9491 -1.1275 4.3673 17 1 6.9944 -1.1627 3.3130 18 1 6.4701 -0.4064 5.5563 19 1 5.5846 -2.5151 4.7501 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8306 -0.5261 -0.7814 24 1 1.0611 1.8873 -1.8713 25 1 2.7165 1.2518 -2.0264 26 1 1.9527 3.9619 -0.8475 27 1 2.6548 3.6928 -2.4605 28 1 4.6678 2.6886 -1.4165 29 1 4.4024 4.3469 -0.8273 30 1 4.9461 2.8142 1.0445 31 1 3.2905 3.4487 1.1992 32 1 3.3862 -0.4429 5.3904 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000166680315.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:21 Heat of formation + Delta-G solvation = -47.522397 kcal Electronic energy + Delta-G solvation = -13399.992781 eV Core-core repulsion = 11167.438087 eV Total energy + Delta-G solvation = -2232.554694 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.65206 -35.32220 -34.30674 -31.51671 -29.38849 -28.41430 -24.45517 -24.11182 -21.68737 -21.03961 -19.48032 -17.28575 -15.93799 -14.88492 -14.62271 -14.04115 -13.96371 -13.52731 -13.17200 -12.84857 -12.37775 -12.15230 -11.99366 -11.34060 -11.21746 -11.01927 -10.77563 -10.69253 -10.51083 -10.35066 -10.15053 -9.64968 -9.27582 -8.84292 -7.80590 -7.65611 -5.76764 -3.37089 3.39781 3.42901 3.47036 4.43190 4.70277 5.01302 5.13724 5.31563 5.53028 5.54775 5.66588 5.71935 5.81371 5.88928 5.95722 5.97590 6.13394 6.15459 6.31538 6.35742 6.44518 6.51133 6.60312 6.78120 7.04070 7.06491 7.62543 7.65441 7.97949 8.60529 9.66813 10.40407 11.44684 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.037979 B = 0.010887 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.064292 B = 2571.243419 C = 3069.445212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.669 5.669 3 C 0.095 3.905 4 H 0.077 0.923 5 C -0.145 4.145 6 C -0.113 4.113 7 C -0.117 4.117 8 C -0.140 4.140 9 C 0.113 3.887 10 H 0.035 0.965 11 O -0.270 6.270 12 C -0.346 4.346 13 H 0.058 0.942 14 C 0.020 3.980 15 N -0.889 5.889 16 Si 0.918 3.082 17 H -0.276 1.276 18 H -0.285 1.285 19 H -0.285 1.285 20 H 0.060 0.940 21 H 0.064 0.936 22 H 0.009 0.991 23 H 0.331 0.669 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.111 4.193 -11.479 12.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.297 5.297 3 C -0.016 4.016 4 H 0.095 0.905 5 C -0.185 4.185 6 C -0.151 4.151 7 C -0.154 4.154 8 C -0.179 4.179 9 C 0.053 3.947 10 H 0.053 0.947 11 O -0.185 6.185 12 C -0.425 4.425 13 H 0.075 0.925 14 C -0.177 4.177 15 N -0.533 5.533 16 Si 0.746 3.254 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.211 1.211 20 H 0.079 0.921 21 H 0.083 0.917 22 H 0.027 0.973 23 H 0.148 0.852 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.293 4.081 -10.503 11.499 hybrid contribution 0.769 -0.206 -0.735 1.084 sum -1.524 3.874 -11.239 11.985 Atomic orbital electron populations 1.22160 0.88742 1.01089 0.99538 1.60263 1.06557 1.13753 1.49083 1.21692 0.97624 0.89013 0.93230 0.90509 1.22261 1.00338 0.97328 0.98523 1.21461 0.97218 0.96448 1.00003 1.21533 0.96303 1.00390 0.97222 1.22137 1.02034 0.98818 0.94921 1.21610 0.92825 0.92181 0.88129 0.94719 1.85721 1.37709 1.72757 1.22265 1.20862 0.92273 1.32497 0.96916 0.92471 1.24861 0.97606 0.99345 0.95891 1.70031 1.27922 1.47612 1.07724 0.86001 0.81428 0.79179 0.78807 1.20138 1.21187 1.21102 0.92109 0.91720 0.97289 0.85158 0.92544 0.92082 0.92053 0.92669 0.92471 0.92565 0.91707 0.92020 0.93652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 10.50 60.06 0.63 1.18 16 2 N -0.67 -12.69 6.47 -114.01 -0.74 -13.43 16 3 C 0.09 1.78 2.16 -67.71 -0.15 1.63 16 4 H 0.08 1.54 7.80 -51.93 -0.40 1.13 16 5 C -0.15 -2.10 5.17 -26.73 -0.14 -2.24 16 6 C -0.11 -1.52 5.92 -26.73 -0.16 -1.68 16 7 C -0.12 -1.73 5.92 -26.73 -0.16 -1.89 16 8 C -0.14 -2.72 5.54 -26.71 -0.15 -2.86 16 9 C 0.11 2.51 2.31 -26.71 -0.06 2.45 16 10 H 0.03 0.78 7.80 -51.93 -0.41 0.38 16 11 O -0.27 -7.86 9.29 -16.48 -0.15 -8.01 16 12 C -0.35 -10.38 9.78 30.88 0.30 -10.08 16 13 H 0.06 1.64 7.64 -52.49 -0.40 1.24 16 14 C 0.02 0.61 5.49 -17.51 -0.10 0.52 16 15 N -0.89 -28.74 13.67 55.48 0.76 -27.98 16 16 Si 0.92 22.83 29.55 -169.99 -5.02 17.80 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 18 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.06 1.10 8.06 -51.93 -0.42 0.68 16 22 H 0.01 0.12 7.44 -51.93 -0.39 -0.27 16 23 H 0.33 5.57 8.56 -39.29 -0.34 5.23 16 24 H 0.06 0.74 7.45 -51.93 -0.39 0.35 16 25 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 26 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 261.27 15.07 3.94 3.94 Total: -1.00 -33.60 261.27 -6.45 -40.05 By element: Atomic # 1 Polarization: 5.86 SS G_CDS: -5.26 Total: 0.61 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 0.03 Total: -12.97 kcal Atomic # 7 Polarization: -41.43 SS G_CDS: 0.02 Total: -41.41 kcal Atomic # 8 Polarization: -7.86 SS G_CDS: -0.15 Total: -8.01 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -33.60 -6.45 -40.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166680315.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.475 kcal (2) G-P(sol) polarization free energy of solvation -33.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds