Wall clock time and date at job start Mon Mar 30 2020 02:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46905 * 111.00157 * 2 1 4 4 H 1.09000 * 109.46374 * 35.00338 * 3 2 1 5 5 C 1.52997 * 109.47252 * 275.00117 * 3 2 1 6 6 C 1.52999 * 109.46991 * 179.97438 * 5 3 2 7 7 C 1.53006 * 109.46626 * 60.00378 * 6 5 3 8 8 C 1.52997 * 109.47127 * 299.99539 * 7 6 5 9 9 C 1.52996 * 109.46983 * 155.00111 * 3 2 1 10 10 H 1.08996 * 109.47452 * 60.00080 * 9 3 2 11 11 O 1.42911 * 109.47245 * 300.00140 * 9 3 2 12 12 C 1.34921 * 116.99578 * 150.00213 * 11 9 3 13 13 H 1.07992 * 120.00483 * 359.97438 * 12 11 9 14 14 C 1.38642 * 119.99241 * 180.02562 * 12 11 9 15 15 N 1.31572 * 120.00484 * 0.02562 * 14 12 11 16 16 Si 1.86808 * 119.99721 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46960 * 0.02562 * 16 14 12 18 18 H 1.48498 * 109.46598 * 119.99955 * 16 14 12 19 19 H 1.48496 * 109.47296 * 240.00437 * 16 14 12 20 20 H 1.09004 * 109.47329 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47241 * 299.99901 * 1 2 3 22 22 H 1.09006 * 109.47335 * 59.99935 * 1 2 3 23 23 H 1.00906 * 111.00015 * 236.04723 * 2 1 3 24 24 H 1.09002 * 109.47153 * 59.99950 * 5 3 2 25 25 H 1.08993 * 109.47194 * 300.00238 * 5 3 2 26 26 H 1.08993 * 109.47839 * 300.00447 * 6 5 3 27 27 H 1.09000 * 109.47160 * 180.02562 * 6 5 3 28 28 H 1.09001 * 109.46801 * 59.99811 * 7 6 5 29 29 H 1.09001 * 109.46998 * 179.97438 * 7 6 5 30 30 H 1.09002 * 109.47153 * 180.02562 * 8 7 6 31 31 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 32 32 H 0.96998 * 120.00765 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 1 1.3397 2.0122 0.5895 5 6 2.0609 1.8927 -1.4370 6 6 2.6086 3.3213 -1.4368 7 6 4.0119 3.3293 -0.8271 8 6 3.9465 2.8080 0.6099 9 6 3.3987 1.3790 0.6096 10 1 4.0544 0.7381 0.0202 11 8 3.3377 0.8921 1.9518 12 6 4.4296 0.2543 2.4222 13 1 5.2969 0.1310 1.7907 14 6 4.4377 -0.2437 3.7161 15 7 3.3804 -0.0948 4.4850 16 14 5.9491 -1.1275 4.3673 17 1 6.9944 -1.1627 3.3130 18 1 6.4701 -0.4064 5.5563 19 1 5.5846 -2.5151 4.7501 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 1.8306 -0.5261 -0.7814 24 1 1.0611 1.8873 -1.8713 25 1 2.7165 1.2518 -2.0264 26 1 1.9527 3.9619 -0.8475 27 1 2.6548 3.6928 -2.4605 28 1 4.6678 2.6886 -1.4165 29 1 4.4024 4.3469 -0.8273 30 1 4.9461 2.8142 1.0445 31 1 3.2905 3.4487 1.1992 32 1 3.3862 -0.4429 5.3904 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166680315.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:21 Heat of formation + Delta-G solvation = -72.232021 kcal Electronic energy + Delta-G solvation = -13401.064271 eV Core-core repulsion = 11167.438087 eV Total energy + Delta-G solvation = -2233.626184 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.17046 -37.26486 -35.67436 -33.73447 -30.79330 -29.92497 -26.59292 -25.55609 -23.16949 -22.44723 -20.93272 -19.45890 -17.69615 -16.58620 -16.06179 -15.88137 -15.49021 -14.96553 -14.51793 -14.35454 -14.04889 -13.72775 -13.59993 -13.17026 -12.86151 -12.62304 -12.31181 -12.17004 -12.05768 -11.97087 -11.60893 -11.30304 -11.11788 -10.80452 -9.97506 -9.07247 -8.06409 -5.71514 1.39689 1.45565 1.55519 2.38205 3.24759 3.35611 3.57970 3.89509 4.11777 4.22631 4.28949 4.39229 4.48834 4.51508 4.59966 4.65057 4.74906 4.92824 5.01334 5.04242 5.12275 5.18574 5.24041 5.29756 5.31078 5.45045 5.52562 6.25441 6.31465 6.65748 7.36871 8.25543 9.19186 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.037979 B = 0.010887 C = 0.009120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.064292 B = 2571.243419 C = 3069.445212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.704 5.704 3 C 0.100 3.900 4 H 0.056 0.944 5 C -0.133 4.133 6 C -0.111 4.111 7 C -0.108 4.108 8 C -0.136 4.136 9 C 0.101 3.899 10 H 0.027 0.973 11 O -0.314 6.314 12 C -0.354 4.354 13 H 0.063 0.937 14 C -0.047 4.047 15 N -0.941 5.941 16 Si 0.997 3.003 17 H -0.259 1.259 18 H -0.278 1.278 19 H -0.279 1.279 20 H 0.072 0.928 21 H 0.043 0.957 22 H 0.039 0.961 23 H 0.342 0.658 24 H 0.078 0.922 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.090 0.910 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 4.436 -13.461 14.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.333 5.333 3 C -0.010 4.010 4 H 0.074 0.926 5 C -0.172 4.172 6 C -0.149 4.149 7 C -0.146 4.146 8 C -0.175 4.175 9 C 0.042 3.958 10 H 0.045 0.955 11 O -0.229 6.229 12 C -0.434 4.434 13 H 0.080 0.920 14 C -0.239 4.239 15 N -0.587 5.587 16 Si 0.821 3.179 17 H -0.183 1.183 18 H -0.204 1.204 19 H -0.205 1.205 20 H 0.091 0.909 21 H 0.062 0.938 22 H 0.058 0.942 23 H 0.160 0.840 24 H 0.097 0.903 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.668 4.339 -12.528 13.363 hybrid contribution 0.534 -0.251 -0.174 0.615 sum -1.134 4.088 -12.702 13.392 Atomic orbital electron populations 1.22127 0.87016 1.02024 0.99905 1.60165 1.08526 1.14294 1.50364 1.21579 0.94746 0.89067 0.95631 0.92602 1.22159 1.02052 0.97965 0.95058 1.21486 0.95793 0.95733 1.01858 1.21493 0.97944 1.01472 0.93686 1.22045 1.00144 0.97014 0.98273 1.22036 0.95388 0.93145 0.85246 0.95511 1.85646 1.38025 1.73260 1.25969 1.21284 0.92704 1.32020 0.97374 0.91977 1.26072 1.01382 1.00399 0.96076 1.70214 1.30825 1.49450 1.08237 0.84804 0.77212 0.77585 0.78337 1.18291 1.20380 1.20476 0.90942 0.93836 0.94223 0.83976 0.90324 0.91150 0.92089 0.89172 0.91698 0.90335 0.93791 0.93306 0.93607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.19 10.50 127.69 1.34 2.53 16 2 N -0.70 -26.58 6.47 -514.60 -3.33 -29.91 16 3 C 0.10 3.73 2.16 44.91 0.10 3.83 16 4 H 0.06 2.28 7.80 -2.39 -0.02 2.26 16 5 C -0.13 -3.47 5.17 30.59 0.16 -3.31 16 6 C -0.11 -2.58 5.92 30.60 0.18 -2.40 16 7 C -0.11 -2.95 5.92 30.60 0.18 -2.77 16 8 C -0.14 -5.30 5.54 30.61 0.17 -5.13 16 9 C 0.10 4.57 2.31 30.61 0.07 4.64 16 10 H 0.03 1.23 7.80 -2.39 -0.02 1.21 16 11 O -0.31 -18.92 9.29 -81.90 -0.76 -19.68 16 12 C -0.35 -21.81 9.78 67.92 0.66 -21.14 16 13 H 0.06 3.62 7.64 -2.91 -0.02 3.60 16 14 C -0.05 -2.92 5.49 84.83 0.47 -2.46 16 15 N -0.94 -62.66 13.67 21.61 0.30 -62.37 16 16 Si 1.00 47.40 29.55 68.60 2.03 49.42 16 17 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 19 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 20 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 21 H 0.04 1.50 8.06 -2.39 -0.02 1.48 16 22 H 0.04 0.98 7.44 -2.38 -0.02 0.96 16 23 H 0.34 11.21 8.56 -89.69 -0.77 10.45 16 24 H 0.08 1.75 7.45 -2.39 -0.02 1.73 16 25 H 0.07 1.73 8.13 -2.39 -0.02 1.71 16 26 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 30 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.26 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -74.87 261.27 1.87 -73.00 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: 0.31 Total: 15.75 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 3.33 Total: -26.21 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -3.03 Total: -92.28 kcal Atomic # 8 Polarization: -18.92 SS G_CDS: -0.76 Total: -19.68 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Total: -74.87 1.87 -73.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166680315.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.765 kcal (2) G-P(sol) polarization free energy of solvation -74.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds