Wall clock time and date at job start Mon Mar 30 2020 02:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86803 * 119.99967 * 2 1 4 4 H 1.48503 * 109.47135 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47080 * 119.99498 * 3 2 1 6 6 H 1.48497 * 109.46952 * 239.99850 * 3 2 1 7 7 C 1.39880 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99673 * 154.63021 * 7 2 1 9 9 C 1.41190 * 120.00329 * 334.63441 * 7 2 1 10 10 C 1.40828 * 120.15787 * 334.42533 * 9 7 2 11 11 C 1.37112 * 119.83204 * 179.71522 * 10 9 7 12 12 F 1.35094 * 119.91617 * 180.27762 * 11 10 9 13 13 C 1.39458 * 120.15861 * 0.55887 * 11 10 9 14 14 O 1.35759 * 119.83572 * 179.69410 * 13 11 10 15 15 C 1.39459 * 120.33393 * 359.71758 * 13 11 10 16 16 F 1.35093 * 119.92369 * 179.97438 * 15 13 11 17 17 C 1.37106 * 120.16196 * 0.02562 * 15 13 11 18 18 H 0.96996 * 119.99437 * 174.19280 * 1 2 3 19 19 H 1.08002 * 120.08587 * 359.97438 * 10 9 7 20 20 H 0.96704 * 113.99648 * 270.02617 * 14 13 11 21 21 H 1.08000 * 120.08387 * 179.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 1.2779 2.7465 -0.0006 5 1 3.0965 1.6965 1.2125 6 1 3.0966 1.6964 -1.2125 7 6 2.0083 -1.2114 0.0005 8 1 3.0102 -1.2566 -0.4002 9 6 1.4045 -2.3750 0.5249 10 6 0.3916 -2.2696 1.4975 11 6 -0.1943 -3.4037 1.9979 12 9 -1.1701 -3.3044 2.9269 13 6 0.2187 -4.6598 1.5544 14 8 -0.3616 -5.7786 2.0588 15 6 1.2252 -4.7723 0.5956 16 9 1.6192 -5.9931 0.1723 17 6 1.8166 -3.6468 0.0824 18 1 -0.4849 -0.8357 -0.0850 19 1 0.0741 -1.2977 1.8455 20 1 0.0778 -6.1289 2.8458 21 1 2.5962 -3.7354 -0.6598 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213936957.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:12 Heat of formation + Delta-G solvation = -134.121675 kcal Electronic energy + Delta-G solvation = -12347.550346 eV Core-core repulsion = 9630.768058 eV Total energy + Delta-G solvation = -2716.782288 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.039 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -48.06735 -48.00415 -38.04797 -36.24551 -33.59324 -29.34795 -28.77882 -25.21379 -21.70077 -21.50542 -18.55387 -17.63098 -16.32444 -16.31352 -15.29901 -14.73825 -14.38698 -14.27037 -14.16953 -13.57506 -13.26761 -12.67934 -12.14429 -11.50200 -11.27774 -11.13233 -10.62260 -10.46433 -9.98071 -9.69959 -9.25330 -7.88492 -7.76911 -7.50528 -4.86483 2.16344 2.26239 3.00102 3.05012 3.21833 3.78904 4.07639 4.85830 4.93399 5.22062 5.59532 6.10597 6.27423 6.43017 6.89627 7.02938 7.10837 7.31626 7.38759 7.69282 7.77373 8.15170 8.40785 8.54954 9.68188 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.048214 B = 0.011631 C = 0.009719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.604825 B = 2406.862519 C = 2880.314006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.035 3.965 3 Si 1.070 2.930 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.272 1.272 7 C -0.487 4.487 8 H 0.089 0.911 9 C 0.123 3.877 10 C -0.260 4.260 11 C 0.142 3.858 12 F -0.150 7.150 13 C -0.128 4.128 14 O -0.482 6.482 15 C 0.142 3.858 16 F -0.151 7.151 17 C -0.262 4.262 18 H 0.304 0.696 19 H 0.126 0.874 20 H 0.356 0.644 21 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.898 -0.524 1.570 3.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.190 4.190 3 Si 0.892 3.108 4 H -0.195 1.195 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.513 4.513 8 H 0.107 0.893 9 C 0.119 3.881 10 C -0.280 4.280 11 C 0.122 3.878 12 F -0.129 7.129 13 C -0.175 4.175 14 O -0.287 6.287 15 C 0.122 3.878 16 F -0.130 7.130 17 C -0.282 4.282 18 H 0.118 0.882 19 H 0.144 0.856 20 H 0.207 0.793 21 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.194 1.155 1.154 2.735 hybrid contribution 0.353 -2.083 0.462 2.162 sum 2.547 -0.927 1.616 3.156 Atomic orbital electron populations 1.70489 1.08281 1.34917 1.25541 1.27313 0.95609 1.04883 0.91207 0.83556 0.75687 0.73189 0.78402 1.19472 1.19556 1.19685 1.20702 1.03171 0.93536 1.33933 0.89311 1.17182 0.89666 0.92172 0.89048 1.20993 1.05892 0.96552 1.04547 1.17460 0.87979 0.93467 0.88884 1.91373 1.60568 1.97089 1.63844 1.17590 1.06605 0.85002 1.08264 1.84932 1.55522 1.41291 1.47004 1.17441 0.94639 0.79544 0.96182 1.91368 1.89972 1.42768 1.88908 1.20746 1.08483 0.91011 1.07984 0.88180 0.85605 0.79309 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -19.09 12.32 55.54 0.68 -18.41 14 2 C 0.03 0.80 4.93 -17.34 -0.09 0.72 14 3 Si 1.07 19.45 30.00 -169.99 -5.10 14.35 14 4 H -0.27 -4.94 7.11 56.52 0.40 -4.54 14 5 H -0.27 -4.74 7.11 56.52 0.40 -4.34 14 6 H -0.27 -4.65 7.11 56.52 0.40 -4.25 14 7 C -0.49 -11.78 8.97 -37.85 -0.34 -12.12 14 8 H 0.09 2.03 7.96 -52.49 -0.42 1.61 14 9 C 0.12 3.07 5.30 -106.82 -0.57 2.50 14 10 C -0.26 -6.44 7.88 -39.01 -0.31 -6.75 14 11 C 0.14 3.44 7.28 -39.54 -0.29 3.15 14 12 F -0.15 -3.50 17.10 2.25 0.04 -3.46 14 13 C -0.13 -3.03 6.74 -38.67 -0.26 -3.29 14 14 O -0.48 -10.42 13.20 -18.99 -0.25 -10.67 14 15 C 0.14 3.33 7.28 -39.54 -0.29 3.05 14 16 F -0.15 -3.38 17.10 2.25 0.04 -3.34 14 17 C -0.26 -6.21 9.73 -39.01 -0.38 -6.59 14 18 H 0.30 7.80 6.69 -40.82 -0.27 7.53 14 19 H 0.13 3.17 6.49 -52.49 -0.34 2.83 14 20 H 0.36 5.93 9.06 45.56 0.41 6.35 14 21 H 0.12 2.58 8.06 -52.49 -0.42 2.15 14 LS Contribution 207.40 15.07 3.13 3.13 Total: -1.00 -26.58 207.40 -3.81 -30.39 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: 0.16 Total: 7.35 kcal Atomic # 6 Polarization: -16.82 SS G_CDS: -2.51 Total: -19.33 kcal Atomic # 7 Polarization: -19.09 SS G_CDS: 0.68 Total: -18.41 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: -0.25 Total: -10.67 kcal Atomic # 9 Polarization: -6.88 SS G_CDS: 0.08 Total: -6.80 kcal Atomic # 14 Polarization: 19.45 SS G_CDS: -5.10 Total: 14.35 kcal Total LS contribution 3.13 Total: 3.13 kcal Total: -26.58 -3.81 -30.39 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213936957.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.728 kcal (2) G-P(sol) polarization free energy of solvation -26.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds