Wall clock time and date at job start Mon Mar 30 2020 02:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30871 * 1 3 3 Si 1.86801 * 120.00013 * 2 1 4 4 H 1.48496 * 109.47240 * 270.00109 * 3 2 1 5 5 H 1.48499 * 109.46825 * 30.00325 * 3 2 1 6 6 H 1.48504 * 109.46831 * 149.99915 * 3 2 1 7 7 C 1.39922 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00109 * 160.42388 * 7 2 1 9 9 C 1.41215 * 119.99776 * 340.69996 * 7 2 1 10 10 C 1.41053 * 120.25731 * 322.77313 * 9 7 2 11 11 F 1.35099 * 120.09511 * 359.97318 * 10 9 7 12 12 C 1.37831 * 119.80338 * 179.71849 * 10 9 7 13 13 C 1.38587 * 120.32992 * 0.53917 * 12 10 9 14 14 C 1.38959 * 120.52352 * 359.75346 * 13 12 10 15 15 O 1.36003 * 119.90855 * 179.97438 * 14 13 12 16 16 C 1.38336 * 120.18639 * 359.96398 * 14 13 12 17 17 F 1.35107 * 120.16740 * 180.02562 * 16 14 13 18 18 H 0.97000 * 120.00475 * 0.02562 * 1 2 3 19 19 H 1.08004 * 119.83570 * 180.27586 * 12 10 9 20 20 H 1.08003 * 119.73580 * 179.74401 * 13 12 10 21 21 H 0.96710 * 114.00093 * 269.98373 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4902 2.0464 -1.4000 5 1 1.4402 2.6526 0.7001 6 1 3.5403 1.4401 0.7001 7 6 2.0083 -1.2118 -0.0005 8 1 3.0415 -1.2387 -0.3139 9 6 1.3617 -2.4005 0.4031 10 6 0.4307 -2.3787 1.4626 11 9 0.1536 -1.2186 2.0970 12 6 -0.1992 -3.5434 1.8451 13 6 0.0858 -4.7371 1.2014 14 6 1.0052 -4.7755 0.1601 15 8 1.2759 -5.9539 -0.4625 16 6 1.6457 -3.6183 -0.2452 17 9 2.5391 -3.6559 -1.2580 18 1 -0.4851 0.8400 -0.0004 19 1 -0.9155 -3.5264 2.6532 20 1 -0.4104 -5.6448 1.5117 21 1 2.0033 -6.4513 -0.0640 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213937041.mol2 21 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:22 Heat of formation + Delta-G solvation = -138.954412 kcal Electronic energy + Delta-G solvation = -12582.284414 eV Core-core repulsion = 9865.292563 eV Total energy + Delta-G solvation = -2716.991851 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 200.039 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -49.35067 -49.10913 -39.76547 -37.40179 -35.42654 -31.86347 -29.74858 -27.34612 -23.32299 -23.09366 -20.01987 -18.50569 -18.42619 -17.89972 -16.85175 -16.55804 -16.10713 -15.70156 -15.53485 -14.92696 -14.67150 -14.17211 -13.63589 -13.28055 -13.09855 -12.79690 -12.31238 -12.08996 -11.97212 -11.35404 -10.99463 -9.54106 -9.08542 -8.83019 -6.59592 0.44052 0.58710 1.33979 1.40937 1.50034 2.15743 2.48547 3.12975 3.34351 3.69362 4.09828 4.26965 4.52113 4.91778 5.10377 5.28493 5.44414 5.56833 5.66407 5.88482 6.23005 6.54244 6.67787 6.96855 8.19618 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.046212 B = 0.014320 C = 0.011497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.761342 B = 1954.857991 C = 2434.869824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.038 3.962 3 Si 0.986 3.014 4 H -0.259 1.259 5 H -0.262 1.262 6 H -0.257 1.257 7 C -0.501 4.501 8 H 0.080 0.920 9 C 0.039 3.961 10 C 0.022 3.978 11 F -0.146 7.146 12 C -0.119 4.119 13 C -0.196 4.196 14 C 0.091 3.909 15 O -0.502 6.502 16 C -0.050 4.050 17 F -0.157 7.157 18 H 0.294 0.706 19 H 0.147 0.853 20 H 0.158 0.842 21 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.123 -3.288 3.215 4.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.179 4.179 3 Si 0.805 3.195 4 H -0.184 1.184 5 H -0.186 1.186 6 H -0.181 1.181 7 C -0.529 4.529 8 H 0.098 0.902 9 C 0.035 3.965 10 C 0.001 3.999 11 F -0.125 7.125 12 C -0.138 4.138 13 C -0.215 4.215 14 C 0.046 3.954 15 O -0.314 6.314 16 C -0.071 4.071 17 F -0.136 7.136 18 H 0.105 0.895 19 H 0.165 0.835 20 H 0.175 0.825 21 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 0.469 -2.945 2.816 4.101 hybrid contribution 0.759 0.775 -0.019 1.085 sum 1.227 -2.170 2.797 3.747 Atomic orbital electron populations 1.69791 1.09212 1.31599 1.32657 1.26705 0.95476 1.04586 0.91156 0.85142 0.79170 0.75460 0.79710 1.18358 1.18608 1.18053 1.19514 0.99232 0.92285 1.41866 0.90150 1.17790 0.93885 0.92941 0.91901 1.17849 1.04352 0.81768 0.95941 1.91306 1.92678 1.48389 1.80145 1.20916 1.00355 0.90872 1.01665 1.20716 1.03723 0.98669 0.98437 1.18270 0.98165 0.84001 0.94962 1.84746 1.57816 1.31106 1.57702 1.18231 0.99828 0.95610 0.93453 1.91263 1.66676 1.97230 1.58465 0.89502 0.83549 0.82477 0.73916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -43.54 11.13 21.83 0.24 -43.30 14 2 C 0.04 2.00 4.52 85.24 0.39 2.39 14 3 Si 0.99 39.40 29.60 68.60 2.03 41.43 14 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 14 5 H -0.26 -9.87 7.11 99.48 0.71 -9.16 14 6 H -0.26 -10.06 7.11 99.48 0.71 -9.35 14 7 C -0.50 -27.98 8.57 23.41 0.20 -27.78 14 8 H 0.08 4.42 7.92 -2.91 -0.02 4.40 14 9 C 0.04 2.13 5.39 -21.22 -0.11 2.01 14 10 C 0.02 1.10 6.68 22.86 0.15 1.26 14 11 F -0.15 -7.76 14.30 44.97 0.64 -7.12 14 12 C -0.12 -5.01 10.00 22.26 0.22 -4.78 14 13 C -0.20 -7.60 9.98 22.53 0.22 -7.38 14 14 C 0.09 3.95 6.70 22.47 0.15 4.10 14 15 O -0.50 -18.33 13.36 -93.58 -1.25 -19.58 14 16 C -0.05 -2.58 7.31 22.93 0.17 -2.41 14 17 F -0.16 -8.15 16.67 44.97 0.75 -7.40 14 18 H 0.29 14.29 8.30 -92.71 -0.77 13.52 14 19 H 0.15 5.11 8.06 -2.91 -0.02 5.09 14 20 H 0.16 4.79 8.06 -2.91 -0.02 4.77 14 21 H 0.40 10.06 9.07 -74.05 -0.67 9.39 14 Total: -1.00 -63.50 206.92 4.42 -59.08 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: 0.61 Total: 9.49 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: 1.39 Total: -32.60 kcal Atomic # 7 Polarization: -43.54 SS G_CDS: 0.24 Total: -43.30 kcal Atomic # 8 Polarization: -18.33 SS G_CDS: -1.25 Total: -19.58 kcal Atomic # 9 Polarization: -15.92 SS G_CDS: 1.39 Total: -14.53 kcal Atomic # 14 Polarization: 39.40 SS G_CDS: 2.03 Total: 41.43 kcal Total: -63.50 4.42 -59.08 kcal The number of atoms in the molecule is 21 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213937041.mol2 21 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.872 kcal (2) G-P(sol) polarization free energy of solvation -63.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds