Wall clock time and date at job start Mon Mar 30 2020 02:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 O 1.34280 * 125.40589 * 2 1 4 4 C 1.35081 * 109.39717 * 180.02562 * 3 2 1 5 5 C 1.39740 * 126.19044 * 180.02562 * 4 3 2 6 6 H 1.08000 * 120.00194 * 179.97438 * 5 4 3 7 7 C 1.40156 * 119.99964 * 359.97438 * 5 4 3 8 8 N 1.30808 * 120.00045 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99944 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47270 * 60.00148 * 9 7 5 11 11 H 1.48504 * 109.47191 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47183 * 300.00008 * 9 7 5 13 13 C 1.39541 * 107.61943 * 359.75768 * 4 3 2 14 14 C 1.50706 * 126.77028 * 180.24342 * 13 4 3 15 15 C 1.35783 * 125.40028 * 180.02562 * 2 1 3 16 16 Cl 1.73599 * 126.33712 * 359.97276 * 15 2 1 17 17 H 1.08990 * 109.46991 * 270.00230 * 1 2 3 18 18 H 1.09003 * 109.46449 * 30.00384 * 1 2 3 19 19 H 1.09003 * 109.46727 * 149.99729 * 1 2 3 20 20 H 0.96998 * 119.99555 * 179.97438 * 8 7 5 21 21 H 1.08990 * 109.46960 * 270.19291 * 14 13 4 22 22 H 1.09002 * 109.46671 * 30.19217 * 14 13 4 23 23 H 1.09003 * 109.46987 * 150.19253 * 14 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2851 1.0945 0.0000 4 6 3.5835 0.7219 -0.0006 5 6 4.6876 1.5784 -0.0002 6 1 5.6876 1.1704 -0.0004 7 6 4.4974 2.9670 0.0002 8 7 3.2863 3.4613 -0.0002 9 14 5.9734 4.1119 0.0014 10 1 6.7942 3.8627 -1.2109 11 1 5.5064 5.5216 0.0011 12 1 6.7930 3.8617 1.2142 13 6 3.6227 -0.6729 0.0047 14 6 4.8548 -1.5407 0.0112 15 6 2.2937 -1.1068 -0.0005 16 17 1.7496 -2.7553 -0.0006 17 1 -0.3633 0.0000 1.0276 18 1 -0.3632 0.8900 -0.5139 19 1 -0.3633 -0.8900 -0.5139 20 1 3.1547 4.4223 0.0005 21 1 5.1566 -1.7509 -1.0148 22 1 5.6619 -1.0218 0.5283 23 1 4.6369 -2.4771 0.5249 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213960996.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:45 Heat of formation + Delta-G solvation = -44.204683 kcal Electronic energy + Delta-G solvation = -10746.984337 eV Core-core repulsion = 8585.897823 eV Total energy + Delta-G solvation = -2161.086514 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.034 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -42.44521 -37.33292 -35.71283 -34.06703 -32.64320 -29.51338 -28.35271 -24.96660 -21.65944 -20.72879 -19.26835 -17.10701 -16.52894 -16.22607 -15.03314 -14.79764 -14.17313 -13.85730 -13.58199 -13.37688 -13.21874 -12.94996 -12.83140 -12.76210 -12.56275 -12.32265 -11.94489 -11.29819 -11.29357 -9.71325 -9.10177 -8.78604 -6.43100 1.14529 1.38907 1.47471 1.54135 1.55679 1.96683 2.17118 2.96513 3.15197 4.32047 4.57857 4.70574 4.78834 4.81473 5.02735 5.06392 5.09526 5.20583 5.36880 5.67079 5.96770 6.08076 6.53268 6.63344 7.14604 8.23299 Molecular weight = 200.03amu Principal moments of inertia in cm(-1) A = 0.054283 B = 0.011411 C = 0.009494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 515.690526 B = 2453.157429 C = 2948.398437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 C -0.159 4.159 3 O -0.173 6.173 4 C 0.178 3.822 5 C -0.465 4.465 6 H 0.115 0.885 7 C 0.022 3.978 8 N -0.814 5.814 9 Si 1.004 2.996 10 H -0.253 1.253 11 H -0.267 1.267 12 H -0.253 1.253 13 C -0.384 4.384 14 C -0.032 4.032 15 C -0.077 4.077 16 Cl -0.060 7.060 17 H 0.072 0.928 18 H 0.065 0.935 19 H 0.086 0.914 20 H 0.294 0.706 21 H 0.041 0.959 22 H 0.050 0.950 23 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 -2.469 0.035 2.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.208 4.208 3 O -0.071 6.071 4 C 0.126 3.874 5 C -0.494 4.494 6 H 0.133 0.867 7 C -0.195 4.195 8 N -0.440 5.440 9 Si 0.822 3.178 10 H -0.177 1.177 11 H -0.191 1.191 12 H -0.177 1.177 13 C -0.387 4.387 14 C -0.089 4.089 15 C -0.105 4.105 16 Cl -0.032 7.032 17 H 0.090 0.910 18 H 0.084 0.916 19 H 0.105 0.895 20 H 0.105 0.895 21 H 0.060 0.940 22 H 0.069 0.931 23 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.271 -2.163 0.035 2.180 hybrid contribution 0.270 0.165 -0.008 0.316 sum -0.001 -1.998 0.027 1.998 Atomic orbital electron populations 1.19968 0.84410 1.03005 1.02548 1.22367 0.94921 0.83851 1.19632 1.84446 1.16814 1.31737 1.74137 1.19813 0.81873 0.91787 0.93910 1.19127 0.92490 0.90898 1.46888 0.86717 1.27193 1.00803 1.00552 0.90942 1.69841 1.24813 1.16113 1.33276 0.84916 0.76456 0.75811 0.80590 1.17727 1.19098 1.17698 1.20184 0.94211 0.92860 1.31417 1.19547 0.93165 0.96484 0.99673 1.20463 0.93764 0.84417 1.11831 1.98195 1.89778 1.17642 1.97566 0.90980 0.91577 0.89511 0.89499 0.94000 0.93108 0.92961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -1.62 10.24 71.24 0.73 -0.90 14 2 C -0.16 -7.90 7.32 25.12 0.18 -7.72 14 3 O -0.17 -9.96 8.97 -10.08 -0.09 -10.05 14 4 C 0.18 10.09 6.79 22.95 0.16 10.25 14 5 C -0.47 -24.87 9.07 23.10 0.21 -24.66 14 6 H 0.12 5.65 7.31 -2.91 -0.02 5.63 14 7 C 0.02 1.12 5.50 85.31 0.47 1.59 14 8 N -0.81 -43.22 12.01 21.87 0.26 -42.96 14 9 Si 1.00 36.66 29.56 68.60 2.03 38.68 14 10 H -0.25 -8.85 7.11 99.48 0.71 -8.15 14 11 H -0.27 -9.23 7.11 99.48 0.71 -8.53 14 12 H -0.25 -8.83 7.11 99.48 0.71 -8.13 14 13 C -0.38 -19.78 6.28 -19.17 -0.12 -19.90 14 14 C -0.03 -1.37 10.07 71.24 0.72 -0.65 14 15 C -0.08 -3.73 6.67 22.08 0.15 -3.58 14 16 Cl -0.06 -2.34 28.72 -2.72 -0.08 -2.42 14 17 H 0.07 2.48 8.14 -2.39 -0.02 2.46 14 18 H 0.07 2.40 8.14 -2.39 -0.02 2.38 14 19 H 0.09 2.88 7.87 -2.39 -0.02 2.86 14 20 H 0.29 13.96 8.30 -92.71 -0.77 13.20 14 21 H 0.04 1.69 8.14 -2.39 -0.02 1.67 14 22 H 0.05 2.09 7.58 -2.39 -0.02 2.07 14 23 H 0.05 2.05 8.13 -2.39 -0.02 2.03 14 Total: -1.00 -60.64 226.13 5.83 -54.81 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.22 Total: 7.51 kcal Atomic # 6 Polarization: -48.06 SS G_CDS: 2.49 Total: -45.57 kcal Atomic # 7 Polarization: -43.22 SS G_CDS: 0.26 Total: -42.96 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.09 Total: -10.05 kcal Atomic # 14 Polarization: 36.66 SS G_CDS: 2.03 Total: 38.68 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -0.08 Total: -2.42 kcal Total: -60.64 5.83 -54.81 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213960996.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.607 kcal (2) G-P(sol) polarization free energy of solvation -60.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds