Wall clock time and date at job start Mon Mar 30 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39347 * 126.26961 * 2 1 4 4 C 1.41563 * 126.92782 * 0.02562 * 3 2 1 5 5 H 1.08004 * 119.99469 * 327.25391 * 4 3 2 6 6 C 1.39701 * 120.00273 * 147.24784 * 4 3 2 7 7 N 1.31028 * 119.99935 * 339.59203 * 6 4 3 8 8 Si 1.86800 * 119.99754 * 159.58826 * 6 4 3 9 9 H 1.48499 * 109.47262 * 60.00248 * 8 6 4 10 10 H 1.48499 * 109.46659 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47090 * 299.99757 * 8 6 4 12 12 C 1.46445 * 106.15701 * 180.02562 * 3 2 1 13 13 Cl 1.73604 * 126.39636 * 179.97438 * 12 3 2 14 14 N 1.30474 * 107.21328 * 0.22516 * 12 3 2 15 15 N 1.34330 * 126.27453 * 180.02562 * 2 1 3 16 16 C 1.46506 * 125.17746 * 359.97430 * 15 2 1 17 17 H 1.08996 * 109.46965 * 89.99796 * 1 2 3 18 18 H 1.08995 * 109.46870 * 210.00083 * 1 2 3 19 19 H 1.09003 * 109.47021 * 329.99692 * 1 2 3 20 20 H 0.96998 * 119.99762 * 180.02562 * 7 6 4 21 21 H 1.08997 * 109.46985 * 90.00001 * 16 15 2 22 22 H 1.09000 * 109.46766 * 210.00735 * 16 15 2 23 23 H 1.09004 * 109.46645 * 330.00358 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3314 1.1235 0.0000 4 6 1.9222 2.4787 0.0005 5 1 1.0128 2.7683 -0.5051 6 6 2.6946 3.4414 0.6550 7 7 3.5464 3.0784 1.5820 8 14 2.5128 5.2461 0.2084 9 1 1.1141 5.6790 0.4565 10 1 3.4375 6.0573 1.0403 11 1 2.8429 5.4365 -1.2269 12 6 3.7066 0.6199 -0.0006 13 17 5.1544 1.5779 -0.0015 14 7 3.6406 -0.6832 -0.0058 15 7 2.3019 -1.0830 -0.0005 16 6 1.8358 -2.4719 -0.0006 17 1 -0.3633 0.0000 -1.0276 18 1 -0.3633 -0.8899 0.5138 19 1 -0.3633 0.8900 0.5139 20 1 4.0824 3.7468 2.0367 21 1 1.7199 -2.8162 -1.0282 22 1 2.5642 -3.0995 0.5130 23 1 0.8766 -2.5333 0.5136 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000213961176.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:53 Heat of formation + Delta-G solvation = 59.466254 kcal Electronic energy + Delta-G solvation = -10842.856162 eV Core-core repulsion = 8718.557908 eV Total energy + Delta-G solvation = -2124.298254 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.26229 -35.16753 -33.38544 -31.81894 -30.63681 -27.14604 -25.50237 -23.65307 -19.89072 -18.44031 -16.83056 -14.88541 -14.80453 -14.43431 -13.61506 -12.93641 -12.37321 -12.22646 -12.09284 -11.77638 -11.36624 -11.16249 -10.77163 -10.52607 -10.19787 -10.17537 -9.96993 -8.92363 -8.64378 -7.67812 -6.91826 -6.39159 -3.96118 2.99896 3.09374 3.25351 3.26134 3.31347 4.09648 4.23496 4.35123 5.34542 5.49463 5.76560 5.90110 6.06551 6.11965 6.44064 6.74766 6.96125 7.33279 7.50438 7.59018 8.38292 8.53250 8.99586 9.10264 9.24152 10.60865 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.039458 B = 0.015492 C = 0.011719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.447074 B = 1806.959604 C = 2388.745050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 C -0.089 4.089 3 C 0.024 3.976 4 C -0.464 4.464 5 H 0.074 0.926 6 C 0.084 3.916 7 N -0.799 5.799 8 Si 0.895 3.105 9 H -0.271 1.271 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.108 3.892 13 Cl -0.016 7.016 14 N -0.318 5.318 15 N -0.380 5.380 16 C 0.121 3.879 17 H 0.046 0.954 18 H 0.042 0.958 19 H 0.072 0.928 20 H 0.274 0.726 21 H 0.052 0.948 22 H 0.071 0.929 23 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.648 -3.544 -1.780 4.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.208 4.208 3 C 0.013 3.987 4 C -0.497 4.497 5 H 0.092 0.908 6 C -0.132 4.132 7 N -0.426 5.426 8 Si 0.720 3.280 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.193 1.193 12 C -0.086 4.086 13 Cl 0.012 6.988 14 N -0.144 5.144 15 N -0.172 5.172 16 C -0.023 4.023 17 H 0.065 0.935 18 H 0.061 0.939 19 H 0.091 0.909 20 H 0.084 0.916 21 H 0.070 0.930 22 H 0.090 0.910 23 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.763 -4.521 -1.607 5.112 hybrid contribution -0.228 1.594 -0.099 1.613 sum -1.992 -2.927 -1.706 3.930 Atomic orbital electron populations 1.19824 0.89175 1.01302 1.00213 1.20826 0.92976 0.86435 1.20581 1.18490 0.86484 0.92952 1.00746 1.18394 1.09039 0.89809 1.32459 0.90815 1.25493 0.94253 1.00094 0.93372 1.69966 1.19774 1.35877 1.16989 0.86599 0.78558 0.83301 0.79503 1.19576 1.20835 1.19305 1.23961 0.88875 0.89267 1.06457 1.98247 1.34693 1.69074 1.96788 1.76277 0.97582 1.13270 1.27305 1.46822 1.02093 1.04537 1.63722 1.21388 0.99464 0.80176 1.01223 0.93488 0.93879 0.90916 0.91569 0.92965 0.91040 0.90906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.89 9.92 36.01 0.36 -0.53 14 2 C -0.09 -2.13 7.04 -81.08 -0.57 -2.71 14 3 C 0.02 0.65 5.70 -104.91 -0.60 0.05 14 4 C -0.46 -12.62 8.98 -37.77 -0.34 -12.96 14 5 H 0.07 1.92 7.92 -52.48 -0.42 1.51 14 6 C 0.08 2.21 4.81 -17.35 -0.08 2.12 14 7 N -0.80 -21.63 10.51 55.54 0.58 -21.05 14 8 Si 0.89 19.79 29.60 -169.99 -5.03 14.76 14 9 H -0.27 -5.85 7.11 56.52 0.40 -5.45 14 10 H -0.28 -6.16 7.11 56.52 0.40 -5.76 14 11 H -0.27 -5.93 7.11 56.52 0.40 -5.53 14 12 C 0.11 2.92 7.65 -14.83 -0.11 2.81 14 13 Cl -0.02 -0.39 26.24 -51.86 -1.36 -1.75 14 14 N -0.32 -8.23 12.43 34.25 0.43 -7.81 14 15 N -0.38 -8.76 3.96 -62.97 -0.25 -9.01 14 16 C 0.12 1.97 11.19 59.85 0.67 2.64 14 17 H 0.05 0.82 8.14 -51.93 -0.42 0.39 14 18 H 0.04 0.69 7.00 -51.93 -0.36 0.33 14 19 H 0.07 1.42 7.99 -51.93 -0.41 1.00 14 20 H 0.27 6.93 8.30 -40.82 -0.34 6.59 14 21 H 0.05 0.76 8.14 -51.93 -0.42 0.34 14 22 H 0.07 1.08 8.14 -51.93 -0.42 0.66 14 23 H 0.07 1.01 6.95 -51.93 -0.36 0.65 14 LS Contribution 221.93 15.07 3.34 3.34 Total: -1.00 -30.40 221.93 -4.92 -35.33 By element: Atomic # 1 Polarization: -3.30 SS G_CDS: -1.96 Total: -5.26 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -0.68 Total: -8.56 kcal Atomic # 7 Polarization: -38.62 SS G_CDS: 0.76 Total: -37.86 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.03 Total: 14.76 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.36 Total: -1.75 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -30.40 -4.92 -35.33 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213961176.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.793 kcal (2) G-P(sol) polarization free energy of solvation -30.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds