Wall clock time and date at job start Mon Mar 30 2020 02:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39347 * 126.26961 * 2 1 4 4 C 1.41563 * 126.92782 * 0.02562 * 3 2 1 5 5 H 1.08004 * 119.99469 * 327.25391 * 4 3 2 6 6 C 1.39701 * 120.00273 * 147.24784 * 4 3 2 7 7 N 1.31028 * 119.99935 * 339.59203 * 6 4 3 8 8 Si 1.86800 * 119.99754 * 159.58826 * 6 4 3 9 9 H 1.48499 * 109.47262 * 60.00248 * 8 6 4 10 10 H 1.48499 * 109.46659 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47090 * 299.99757 * 8 6 4 12 12 C 1.46445 * 106.15701 * 180.02562 * 3 2 1 13 13 Cl 1.73604 * 126.39636 * 179.97438 * 12 3 2 14 14 N 1.30474 * 107.21328 * 0.22516 * 12 3 2 15 15 N 1.34330 * 126.27453 * 180.02562 * 2 1 3 16 16 C 1.46506 * 125.17746 * 359.97430 * 15 2 1 17 17 H 1.08996 * 109.46965 * 89.99796 * 1 2 3 18 18 H 1.08995 * 109.46870 * 210.00083 * 1 2 3 19 19 H 1.09003 * 109.47021 * 329.99692 * 1 2 3 20 20 H 0.96998 * 119.99762 * 180.02562 * 7 6 4 21 21 H 1.08997 * 109.46985 * 90.00001 * 16 15 2 22 22 H 1.09000 * 109.46766 * 210.00735 * 16 15 2 23 23 H 1.09004 * 109.46645 * 330.00358 * 16 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3314 1.1235 0.0000 4 6 1.9222 2.4787 0.0005 5 1 1.0128 2.7683 -0.5051 6 6 2.6946 3.4414 0.6550 7 7 3.5464 3.0784 1.5820 8 14 2.5128 5.2461 0.2084 9 1 1.1141 5.6790 0.4565 10 1 3.4375 6.0573 1.0403 11 1 2.8429 5.4365 -1.2269 12 6 3.7066 0.6199 -0.0006 13 17 5.1544 1.5779 -0.0015 14 7 3.6406 -0.6832 -0.0058 15 7 2.3019 -1.0830 -0.0005 16 6 1.8358 -2.4719 -0.0006 17 1 -0.3633 0.0000 -1.0276 18 1 -0.3633 -0.8899 0.5138 19 1 -0.3633 0.8900 0.5139 20 1 4.0824 3.7468 2.0367 21 1 1.7199 -2.8162 -1.0282 22 1 2.5642 -3.0995 0.5130 23 1 0.8766 -2.5333 0.5136 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000213961176.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:32:53 Heat of formation + Delta-G solvation = 39.937081 kcal Electronic energy + Delta-G solvation = -10843.703010 eV Core-core repulsion = 8718.557908 eV Total energy + Delta-G solvation = -2125.145102 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 200.041 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -41.11502 -37.07966 -35.28375 -33.54605 -32.38889 -28.91597 -27.12331 -25.49869 -21.80677 -20.21214 -18.74712 -16.73293 -16.55876 -16.10588 -15.39245 -14.68900 -14.04986 -13.82162 -13.67665 -13.35227 -12.93702 -12.89919 -12.50424 -12.42394 -12.00034 -11.97125 -11.80099 -10.83816 -10.57148 -9.52580 -8.84055 -8.30139 -5.93989 1.16285 1.28112 1.45348 1.50013 1.56917 2.16740 2.40949 2.61614 3.38922 4.16483 4.38726 4.51742 4.60138 4.74938 4.98270 5.11261 5.26122 5.42265 5.62680 5.68443 6.51322 6.65142 7.09327 7.16226 7.30251 8.70939 Molecular weight = 200.04amu Principal moments of inertia in cm(-1) A = 0.039458 B = 0.015492 C = 0.011719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.447074 B = 1806.959604 C = 2388.745050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C -0.072 4.072 3 C -0.030 4.030 4 C -0.491 4.491 5 H 0.073 0.927 6 C 0.046 3.954 7 N -0.832 5.832 8 Si 0.957 3.043 9 H -0.261 1.261 10 H -0.279 1.279 11 H -0.269 1.269 12 C 0.075 3.925 13 Cl -0.014 7.014 14 N -0.341 5.341 15 N -0.374 5.374 16 C 0.105 3.895 17 H 0.069 0.931 18 H 0.079 0.921 19 H 0.065 0.935 20 H 0.275 0.725 21 H 0.077 0.923 22 H 0.083 0.917 23 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.181 -4.297 -2.079 6.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.195 4.195 3 C -0.041 4.041 4 C -0.524 4.524 5 H 0.091 0.909 6 C -0.167 4.167 7 N -0.461 5.461 8 Si 0.780 3.220 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.194 1.194 12 C -0.116 4.116 13 Cl 0.013 6.987 14 N -0.170 5.170 15 N -0.165 5.165 16 C -0.035 4.035 17 H 0.087 0.913 18 H 0.098 0.902 19 H 0.084 0.916 20 H 0.085 0.915 21 H 0.096 0.904 22 H 0.101 0.899 23 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.294 -5.305 -1.910 6.530 hybrid contribution 0.150 1.603 -0.021 1.611 sum -3.144 -3.702 -1.932 5.227 Atomic orbital electron populations 1.19968 0.85555 1.02769 1.02053 1.21653 0.95203 0.86116 1.16480 1.18966 0.87376 0.94283 1.03485 1.18588 1.09773 0.90643 1.33419 0.90901 1.26164 0.93871 1.03749 0.92880 1.70041 1.20933 1.37041 1.18061 0.85639 0.78953 0.78515 0.78901 1.18493 1.20360 1.19432 1.24174 0.89336 0.89846 1.08229 1.98218 1.34401 1.69194 1.96841 1.76202 0.99429 1.12806 1.28516 1.47458 1.01169 1.06757 1.61070 1.21930 1.01167 0.76843 1.03574 0.91251 0.90215 0.91630 0.91512 0.90434 0.89875 0.87655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.56 9.92 71.24 0.71 -0.86 14 2 C -0.07 -3.32 7.04 42.45 0.30 -3.02 14 3 C -0.03 -1.67 5.70 -20.05 -0.11 -1.78 14 4 C -0.49 -26.89 8.98 23.44 0.21 -26.68 14 5 H 0.07 3.82 7.92 -2.91 -0.02 3.80 14 6 C 0.05 2.45 4.81 85.17 0.41 2.86 14 7 N -0.83 -45.78 10.51 21.79 0.23 -45.55 14 8 Si 0.96 40.76 29.60 68.60 2.03 42.79 14 9 H -0.26 -10.56 7.11 99.48 0.71 -9.85 14 10 H -0.28 -11.52 7.11 99.48 0.71 -10.82 14 11 H -0.27 -11.41 7.11 99.48 0.71 -10.70 14 12 C 0.07 4.11 7.65 87.03 0.67 4.78 14 13 Cl -0.01 -0.72 26.24 -2.72 -0.07 -0.79 14 14 N -0.34 -17.53 12.43 -45.55 -0.57 -18.09 14 15 N -0.37 -16.41 3.96 -353.12 -1.40 -17.80 14 16 C 0.11 3.03 11.19 127.77 1.43 4.46 14 17 H 0.07 2.14 8.14 -2.39 -0.02 2.12 14 18 H 0.08 2.17 7.00 -2.39 -0.02 2.16 14 19 H 0.06 2.40 7.99 -2.39 -0.02 2.38 14 20 H 0.27 14.16 8.30 -92.71 -0.77 13.39 14 21 H 0.08 1.91 8.14 -2.39 -0.02 1.89 14 22 H 0.08 2.23 8.14 -2.39 -0.02 2.21 14 23 H 0.11 2.37 6.95 -2.38 -0.02 2.36 14 Total: -1.00 -65.79 221.93 5.05 -60.74 By element: Atomic # 1 Polarization: -2.26 SS G_CDS: 1.22 Total: -1.04 kcal Atomic # 6 Polarization: -23.86 SS G_CDS: 3.61 Total: -20.25 kcal Atomic # 7 Polarization: -79.71 SS G_CDS: -1.74 Total: -81.45 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.79 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -0.07 Total: -0.79 kcal Total: -65.79 5.05 -60.74 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000213961176.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.678 kcal (2) G-P(sol) polarization free energy of solvation -65.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds