Wall clock time and date at job start Mon Mar 30 2020 01:54:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09005 * 109.46729 * 2 1 4 4 C 1.50700 * 109.46871 * 119.99998 * 2 1 3 5 5 H 1.08004 * 119.99669 * 120.00046 * 4 2 1 6 6 C 1.37875 * 120.00023 * 299.99868 * 4 2 1 7 7 N 1.31521 * 119.99703 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00342 * 0.02562 * 6 4 2 9 9 H 1.48495 * 109.47376 * 89.99523 * 8 6 4 10 10 H 1.48504 * 109.47432 * 210.00061 * 8 6 4 11 11 H 1.48504 * 109.46947 * 329.99627 * 8 6 4 12 12 N 1.46892 * 109.47174 * 240.00113 * 2 1 3 13 13 C 1.46842 * 111.00192 * 183.95490 * 12 2 1 14 14 C 1.53039 * 109.52666 * 185.84212 * 13 12 2 15 15 C 1.53123 * 109.27546 * 300.81951 * 14 13 12 16 16 C 1.53120 * 109.21163 * 57.62218 * 15 14 13 17 17 H 1.09000 * 109.50719 * 62.32149 * 16 15 14 18 18 O 1.42904 * 109.49892 * 182.43619 * 16 15 14 19 19 C 1.46848 * 110.99938 * 308.16419 * 12 2 1 20 20 H 1.08997 * 109.47215 * 299.99954 * 1 2 3 21 21 H 1.09004 * 109.47219 * 59.99817 * 1 2 3 22 22 H 1.08999 * 109.47075 * 179.97438 * 1 2 3 23 23 H 0.96998 * 119.99462 * 180.02562 * 7 6 4 24 24 H 1.09001 * 109.46203 * 65.82095 * 13 12 2 25 25 H 1.09004 * 109.46228 * 305.85648 * 13 12 2 26 26 H 1.08999 * 109.50420 * 180.88146 * 14 13 12 27 27 H 1.09001 * 109.50541 * 60.75500 * 14 13 12 28 28 H 1.09002 * 109.52319 * 177.56011 * 15 14 13 29 29 H 1.08995 * 109.52318 * 297.68693 * 15 14 13 30 30 H 0.96696 * 114.00241 * 299.99560 * 18 16 15 31 31 H 1.08999 * 109.46555 * 294.17605 * 19 12 2 32 32 H 1.09000 * 109.46248 * 54.14574 * 19 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5566 8 14 0.6248 1.2790 2.6542 9 1 -0.8028 0.8727 2.6997 10 1 0.9759 1.9951 3.9069 11 1 0.8471 2.1765 1.4921 12 7 2.0197 -0.6924 -1.1994 13 6 3.4845 -0.7945 -1.1870 14 6 3.9672 -1.3877 -2.5126 15 6 3.3421 -2.7723 -2.7041 16 6 1.8166 -2.6464 -2.6641 17 1 1.4818 -2.0154 -3.4875 18 8 1.2276 -3.9427 -2.7855 19 6 1.3965 -2.0152 -1.3347 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.9034 -0.5279 4.4375 24 1 3.7967 -1.4392 -0.3654 25 1 3.9166 0.1975 -1.0544 26 1 5.0533 -1.4778 -2.4969 27 1 3.6672 -0.7364 -3.3335 28 1 3.6488 -3.1805 -3.6672 29 1 3.6738 -3.4354 -1.9052 30 1 1.4542 -4.4025 -3.6054 31 1 1.7184 -2.6542 -0.5125 32 1 0.3118 -1.9099 -1.3094 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218445151.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:20 Heat of formation + Delta-G solvation = -46.675728 kcal Electronic energy + Delta-G solvation = -13623.955242 eV Core-core repulsion = 11391.437262 eV Total energy + Delta-G solvation = -2232.517980 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 199.131 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.84485 -36.18336 -33.74214 -31.86903 -29.23234 -29.09667 -25.11378 -23.75464 -22.03256 -20.19318 -19.10219 -16.95353 -16.51700 -15.66232 -14.56005 -14.25729 -14.06810 -13.37081 -13.08694 -12.88315 -12.60931 -12.19513 -12.11048 -11.43313 -11.26367 -10.77343 -10.67292 -10.49832 -10.20781 -9.94655 -9.82721 -9.61755 -9.34645 -9.30342 -8.58381 -7.20469 -6.11084 -4.12019 3.26393 3.36531 3.38932 4.33375 4.37977 5.05242 5.14476 5.22813 5.29668 5.48124 5.69266 5.93472 6.01330 6.16809 6.19691 6.29242 6.38295 6.44808 6.47836 6.63655 6.66908 6.79354 6.87138 7.02163 7.22320 7.55822 7.89037 8.07879 8.13523 8.45174 8.90511 9.51924 11.01871 Molecular weight = 199.13amu Principal moments of inertia in cm(-1) A = 0.047321 B = 0.011057 C = 0.010656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.566673 B = 2531.780484 C = 2627.095276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.176 3.824 3 H 0.042 0.958 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.073 3.927 7 N -0.898 5.898 8 Si 0.890 3.110 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.265 1.265 12 N -0.526 5.526 13 C 0.059 3.941 14 C -0.114 4.114 15 C -0.150 4.150 16 C 0.105 3.895 17 H 0.056 0.944 18 O -0.570 6.570 19 C 0.064 3.936 20 H 0.041 0.959 21 H 0.037 0.963 22 H 0.055 0.945 23 H 0.264 0.736 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.371 0.629 31 H 0.048 0.952 32 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.533 -1.058 -11.840 11.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.069 3.931 3 H 0.060 0.940 4 C -0.584 4.584 5 H 0.094 0.906 6 C -0.130 4.130 7 N -0.536 5.536 8 Si 0.721 3.279 9 H -0.206 1.206 10 H -0.226 1.226 11 H -0.190 1.190 12 N -0.252 5.252 13 C -0.070 4.070 14 C -0.152 4.152 15 C -0.187 4.187 16 C 0.046 3.954 17 H 0.074 0.926 18 O -0.374 6.374 19 C -0.064 4.064 20 H 0.060 0.940 21 H 0.056 0.944 22 H 0.074 0.926 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.086 0.914 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.216 0.784 31 H 0.066 0.934 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.155 -0.619 -11.461 11.479 hybrid contribution -0.075 0.107 0.507 0.524 sum 0.080 -0.511 -10.954 10.966 Atomic orbital electron populations 1.22253 0.98668 1.00949 0.98795 1.19704 0.91332 0.94953 0.87144 0.94004 1.21613 1.32826 1.14150 0.89792 0.90579 1.24989 0.95512 0.96646 0.95814 1.69923 1.45385 1.40295 0.97976 0.86812 0.80569 0.83618 0.76914 1.20591 1.22574 1.19015 1.62270 1.05295 1.17188 1.40430 1.21931 0.89096 1.00632 0.95311 1.21566 0.99102 0.95522 0.99005 1.22282 0.96699 0.98449 1.01319 1.21883 0.91165 0.83217 0.99099 0.92619 1.86512 1.74745 1.31495 1.44611 1.21793 0.99966 0.90647 0.94006 0.94042 0.94402 0.92625 0.92658 0.93427 0.91386 0.92023 0.91808 0.92645 0.91508 0.78354 0.93407 0.90468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 8.17 37.16 0.30 -3.01 16 2 C 0.18 4.19 2.08 -68.87 -0.14 4.05 16 3 H 0.04 1.03 7.20 -51.93 -0.37 0.66 16 4 C -0.55 -15.12 7.79 -34.44 -0.27 -15.39 16 5 H 0.08 2.31 6.09 -52.48 -0.32 1.99 16 6 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 7 N -0.90 -27.46 13.96 55.43 0.77 -26.68 16 8 Si 0.89 22.00 24.37 -169.99 -4.14 17.86 16 9 H -0.28 -6.75 6.87 56.52 0.39 -6.36 16 10 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 11 H -0.27 -6.27 6.53 56.52 0.37 -5.90 16 12 N -0.53 -11.00 4.71 -228.07 -1.07 -12.08 16 13 C 0.06 1.14 4.97 -3.84 -0.02 1.12 16 14 C -0.11 -1.73 6.10 -26.65 -0.16 -1.89 16 15 C -0.15 -2.20 5.62 -26.61 -0.15 -2.35 16 16 C 0.11 1.71 3.64 -26.64 -0.10 1.62 16 17 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 18 O -0.57 -8.80 13.33 -35.23 -0.47 -9.27 16 19 C 0.06 1.30 4.39 -3.83 -0.02 1.28 16 20 H 0.04 0.95 3.27 -51.93 -0.17 0.78 16 21 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 22 H 0.05 1.22 6.19 -51.93 -0.32 0.90 16 23 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 24 H 0.05 1.05 6.46 -51.93 -0.34 0.71 16 25 H 0.07 1.30 8.12 -51.93 -0.42 0.88 16 26 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.37 3.77 9.08 45.56 0.41 4.18 16 31 H 0.05 1.11 7.17 -51.93 -0.37 0.74 16 32 H 0.08 1.58 5.84 -51.93 -0.30 1.28 16 LS Contribution 241.66 15.07 3.64 3.64 Total: -1.00 -30.61 241.66 -5.84 -36.45 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -3.92 Total: 2.66 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -0.65 Total: -12.58 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.30 Total: -38.76 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: -0.47 Total: -9.27 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.86 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -30.61 -5.84 -36.45 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218445151.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.224 kcal (2) G-P(sol) polarization free energy of solvation -30.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds